CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

plastid 4
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plastid
Any Predictor:	cytosol, plastid
BaCelLo:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY06362	Canola	cytosol, plastid	96.53	96.7
AT1G09570.3	Thale cress	cytosol	92.7	92.45
CDY50896	Canola	endoplasmic reticulum, plastid, vacuole	93.05	90.01
CDX93501	Canola	cytosol	93.41	87.27
VIT_14s0060g00100.t01	Wine grape	nucleus	80.59	80.52
Solyc10g044670.1.1	Tomato	extracellular	78.54	78.54
PGSC0003DMT400040772	Potato	cytosol	78.27	78.27
KRG90417	Soybean	nucleus	77.2	77.2
KRG96653	Soybean	nucleus	73.55	73.1
KRH33709	Soybean	endoplasmic reticulum, golgi, plastid	76.67	72.29
HORVU0Hr1G023250.4	Barley	cytosol	21.02	67.82
GSMUA_Achr8P06130_001	Banana	cytosol, mitochondrion	64.65	67.53
HORVU1Hr1G068750.7	Barley	cytosol	21.19	67.04
TraesCS4B01G052000.1	Wheat	mitochondrion	51.91	65.88
KRH68382	Soybean	endoplasmic reticulum, plastid, vacuole	56.1	64.68
OQU91090	Sorghum	nucleus	63.58	63.13
Os03t0719800-01	Rice	plastid	63.4	63.12
Zm00001d033799_P001	Maize	cytosol	63.49	63.04
Zm00001d013402_P005	Maize	nucleus	63.31	62.86
GSMUA_Achr5P27310_001	Banana	cytosol	8.64	62.58
TraesCS4A01G262900.1	Wheat	mitochondrion	61.98	61.59
HORVU4Hr1G008610.2	Barley	mitochondrion	61.89	61.5
TraesCS4D01G052200.1	Wheat	plastid	61.89	61.29
Zm00001d008542_P001	Maize	cytosol	13.0	60.33
OQU91089	Sorghum	cytosol	9.08	56.98
CDX92112	Canola	cytosol	51.56	51.06
CDY38546	Canola	cytosol, plastid	50.67	50.94
CDY06455	Canola	cytosol, mitochondrion, nucleus, plastid	50.67	50.89
CDX75900	Canola	cytosol	51.02	49.61
CDX95888	Canola	cytosol	51.11	49.14
CDX78827	Canola	cytosol	45.33	47.13
CDY61670	Canola	cytosol	46.66	46.95
CDX82382	Canola	cytosol	5.61	34.24
CDY42549	Canola	cytosol	5.97	29.65

Protein Annotations

Gene3D:1.10.287.130	MapMan:26.1.1.1	Gene3D:3.30.450.20	Gene3D:3.30.450.270	Gene3D:3.30.450.40	Gene3D:3.30.565.10
GO:A0A078GC59	UniProt:A0A078GC59	EnsemblPlants:CDY22632	ProteinID:CDY22632	ProteinID:CDY22632.1	ncoils:Coil
InterPro:GAF	InterPro:GAF-like_dom_sf	GO:GO:0000155	GO:GO:0000160	GO:GO:0003674	GO:GO:0003824
GO:GO:0004871	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0006464	GO:GO:0007154	GO:GO:0007165
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009584	GO:GO:0009585	GO:GO:0009605
GO:GO:0009628	GO:GO:0009881	GO:GO:0009987	GO:GO:0016301	GO:GO:0016740	GO:GO:0017006
GO:GO:0018298	GO:GO:0019538	GO:GO:0023014	GO:GO:0038023	GO:GO:0042803	GO:GO:0050896
EnsemblPlantsGene:GSBRNA2T00019301001	InterPro:HATPase_C	InterPro:HATPase_C_sf	InterPro:HisK_dim/P	InterPro:His_kinase_dom	InterPro:IPR000014
InterPro:IPR005467	InterPro:IPR016132	InterPro:IPR029016	InterPro:IPR036890	InterPro:PAS	InterPro:PAS-like_dom_sf
InterPro:PAS_2	InterPro:PAS_fold	PFAM:PF00360	PFAM:PF00512	PFAM:PF00989	PFAM:PF01590
PFAM:PF02518	PFAM:PF08446	PIRSF:PIRSF000084	PRINTS:PR01033	ScanProsite:PS00245	PFscan:PS50046
PFscan:PS50109	PFscan:PS50112	PANTHER:PTHR43719	PANTHER:PTHR43719:SF13	InterPro:Phyto_chromo_BS	InterPro:Phyto_chromo_attachment
InterPro:Phytochrome	InterPro:Phytochrome_A-E	InterPro:Phytochrome_cen-reg	SMART:SM00065	SMART:SM00091	SMART:SM00387
SMART:SM00388	SUPFAM:SSF55781	SUPFAM:SSF55785	SUPFAM:SSF55874	TIGRFAMs:TIGR00229	UniParc:UPI0004EBB890
SEG:seg	:	:	:	:	:

Description

BnaC08g42660DPhytochrome [Source:UniProtKB/TrEMBL;Acc:A0A078GC59]

Coordinates

chrLK032134:+:182666..187414

Molecular Weight (calculated)

124375.0 Da

IEP (calculated)

6.154

GRAVY (calculated)

-0.134

Length

1123 amino acids

Sequence
(BLAST)

0001: MSGSRPTQSS EGSSRRSRHS ARIIAQTTVD AKLHADFEES GGSSFDYSTS VRVTTPAVEN NQPPRSDKVT TTYLHHIQKG KLIQPFGCLL ALDDKTFKVI
0101: AYSENAPELL TMASHAVPSV GENSVLGVGT DIRSLFTAPS ASALQKALGF GDVSLLNPIL VHCRTSAKPF YAIVHRVTGS IIVDFEPVKP YEVPMTAAGA
0201: LQSYKLAAKA ITRLQSLPSG SMERLCDTMV QEVFELTGYD RVMAYKFHED DHGEVVSEVT KPGLEPYLGL HYPATDIPQA ARFLFMKNKV RMIVDCNAKH
0301: VKVLQDEKLS FDLTLCGSTL RAPHTCHLQY MANMDSIASL VMAVVVNEEE DGEATTTPQK RKRLWGLVVC HNTTPRFVPF PLRYACEFLA QVFAIHVNKE
0401: VELENQIVEK NILRTQTLLC DMLMRDAPLG IVSQSPNIMD LVKCDGAALL YKEKVWKLGK TPSEFHLQEI AFWLCEHHAD STGLSTDSLH DAGFPGALAL
0501: GDSVCGMAAV RISSKDMIFW FRSHTAGEVR WGGAKHDPDD RDDARRMHPR SSFKAFLEVV KTRSLPWKDY EMDAIHSLQL ILRNAFKDGE ATDVNTNIIH
0601: SKLNDLKIDG IQELEAVTSE MVRLIETATV PILAVDSDGL VNGWNTKIAE LTGLPVDEAI GKHLLTLVED SSVDIVQRML ENALEGTEEQ NVQFEIKTHL
0701: SRTDAGPISL VVNACASKDL HENVVGVCFV AHDLTAQKTV MDKFTRIEGD YKAIIQNPNP LIPPIFGTDE SGWCTEWNPA MSKLTGLKRE EVVEKMLLGE
0801: VFGTQKKSCC RLKNQEAFVN LGIVLNNAVV TSQEAEKVPF GFFTSGGKYV ECLLCVSKKL DREGPVTGVF CFLQLASYEL QQALHVQRLA ERTALKRLKA
0901: LAYIKREIRN PLSGIMFARK MMEGTELGPE QRRILQTSGL CEKQLSKILN DSDLESIIEG CLDLEMKEFT LNEVLTASTS QVMMNSNGKN VCVTNETKEE
1001: VMSETLYGDS IRLQQVLADI MLMAVNFTPS GRQLTVTASL RKDQLGRSVH LAYLEIRITH TGAGLPEFLL HQMFGSEEDV SEEGLSLMVS RKLVKLMNGD
1101: VQYLREAGKS SFIITAELAA ASK

Best Arabidopsis Sequence Match ( AT1G09570.3 )
(BLAST)

0001: MEKKMSGSRP TQSSEGSRRS RHSARIIAQT TVDAKLHADF EESGSSFDYS TSVRVTGPVV ENQPPRSDKV TTTYLHHIQK GKLIQPFGCL LALDEKTFKV
0101: IAYSENASEL LTMASHAVPS VGEHPVLGIG TDIRSLFTAP SASALQKALG FGDVSLLNPI LVHCRTSAKP FYAIIHRVTG SIIIDFEPVK PYEVPMTAAG
0201: ALQSYKLAAK AITRLQSLPS GSMERLCDTM VQEVFELTGY DRVMAYKFHE DDHGEVVSEV TKPGLEPYLG LHYPATDIPQ AARFLFMKNK VRMIVDCNAK
0301: HARVLQDEKL SFDLTLCGST LRAPHSCHLQ YMANMDSIAS LVMAVVVNEE DGEGDAPDAT TQPQKRKRLW GLVVCHNTTP RFVPFPLRYA CEFLAQVFAI
0401: HVNKEVELDN QMVEKNILRT QTLLCDMLMR DAPLGIVSQS PNIMDLVKCD GAALLYKDKI WKLGTTPSEF HLQEIASWLC EYHMDSTGLS TDSLHDAGFP
0501: RALSLGDSVC GMAAVRISSK DMIFWFRSHT AGEVRWGGAK HDPDDRDDAR RMHPRSSFKA FLEVVKTRSL PWKDYEMDAI HSLQLILRNA FKDSETTDVN
0601: TKVIYSKLND LKIDGIQELE AVTSEMVRLI ETATVPILAV DSDGLVNGWN TKIAELTGLS VDEAIGKHFL TLVEDSSVEI VKRMLENALE GTEEQNVQFE
0701: IKTHLSRADA GPISLVVNAC ASRDLHENVV GVCFVAHDLT GQKTVMDKFT RIEGDYKAII QNPNPLIPPI FGTDEFGWCT EWNPAMSKLT GLKREEVIDK
0801: MLLGEVFGTQ KSCCRLKNQE AFVNLGIVLN NAVTSQDPEK VSFAFFTRGG KYVECLLCVS KKLDREGVVT GVFCFLQLAS HELQQALHVQ RLAERTAVKR
0901: LKALAYIKRQ IRNPLSGIMF TRKMIEGTEL GPEQRRILQT SALCQKQLSK ILDDSDLESI IEGCLDLEMK EFTLNEVLTA STSQVMMKSN GKSVRITNET
1001: GEEVMSDTLY GDSIRLQQVL ADFMLMAVNF TPSGGQLTVS ASLRKDQLGR SVHLANLEIR LTHTGAGIPE FLLNQMFGTE EDVSEEGLSL MVSRKLVKLM
1101: NGDVQYLRQA GKSSFIITAE LAAANK

Arabidopsis Description

PHYAphytochrome A [Source:TAIR;Acc:AT1G09570]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.