Factsheet for TraesCS4B01G052000.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 5
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	cytosol, mitochondrion
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU0Hr1G023250.4	Barley	cytosol	35.48	90.23
HORVU1Hr1G068750.7	Barley	cytosol	35.25	87.89
TraesCS4A01G262900.1	Wheat	mitochondrion	96.95	75.93
TraesCS4D01G052200.1	Wheat	plastid	96.95	75.66
HORVU4Hr1G008610.2	Barley	mitochondrion	94.8	74.25
Zm00001d008542_P001	Maize	cytosol	20.23	73.97
Os03t0719800-01	Rice	plastid	85.65	67.2
OQU91090	Sorghum	nucleus	85.42	66.84
Zm00001d033799_P001	Maize	cytosol	84.97	66.49
Zm00001d013402_P005	Maize	nucleus	84.86	66.4
GSMUA_Achr5P27310_001	Banana	cytosol	10.73	61.29
GSMUA_Achr8P06130_001	Banana	cytosol, mitochondrion	66.89	55.07
VIT_14s0060g00100.t01	Wine grape	nucleus	67.46	53.11
CDY06362	Canola	cytosol, plastid	66.21	52.27
Bra031672.1-P	Field mustard	cytosol, plastid	65.99	52.1
KRG90417	Soybean	nucleus	66.1	52.09
CDY22632	Canola	cytosol, plastid	65.88	51.91
AT1G09570.3	Thale cress	cytosol	65.88	51.78
Solyc10g044670.1.1	Tomato	extracellular	65.65	51.74
PGSC0003DMT400040772	Potato	cytosol	65.42	51.56
KRG96653	Soybean	nucleus	64.75	50.71
CDY50896	Canola	endoplasmic reticulum, plastid, vacuole	65.88	50.22
KRH68382	Soybean	endoplasmic reticulum, plastid, vacuole	54.12	49.18
KRH33709	Soybean	endoplasmic reticulum, golgi, plastid	66.1	49.12
CDX93501	Canola	cytosol	65.99	48.59
Bra020013.1-P	Field mustard	cytosol	65.76	48.1
OQU91089	Sorghum	cytosol	9.04	44.69
TraesCS5B01G396200.1	Wheat	plastid	56.72	43.58
TraesCS4B01G182400.1	Wheat	plastid	53.22	40.39

Protein Annotations

MapMan:26.1.1.1	Gene3D:3.30.450.20	Gene3D:3.30.450.270	Gene3D:3.30.450.40	InterPro:GAF	InterPro:GAF-like_dom_sf
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0006139	GO:GO:0006355	GO:GO:0006464
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009584	GO:GO:0009605	GO:GO:0009628
GO:GO:0009987	GO:GO:0018298	GO:GO:0019538	InterPro:IPR000014	InterPro:IPR016132	InterPro:IPR029016
InterPro:PAS	InterPro:PAS-like_dom_sf	InterPro:PAS_2	InterPro:PAS_fold	PFAM:PF00360	PFAM:PF00989
PFAM:PF01590	PFAM:PF08446	PRINTS:PR01033	PFscan:PS50046	PFscan:PS50112	PANTHER:PTHR43719
PANTHER:PTHR43719:SF13	InterPro:Phyto_chromo_attachment	InterPro:Phytochrome	InterPro:Phytochrome_cen-reg	SMART:SM00065	SMART:SM00091
SUPFAM:SSF55781	SUPFAM:SSF55785	TIGRFAMs:TIGR00229	EnsemblPlantsGene:TraesCS4B01G052000	EnsemblPlants:TraesCS4B01G052000.1	TIGR:cd00130
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr4B:-:40779851..40783935

Molecular Weight (calculated)

97696.0 Da

IEP (calculated)

5.315

GRAVY (calculated)

-0.101

Length

885 amino acids

Sequence
(BLAST)

001: MPASSSSSRN RRSTQERVLA QTTLDAQLNA EFEESSDSFD YSKLVEAQRD TPTVLQEGRS EKVIAYLQHI QRGKMIQSFG CLLALDEKSF NVIAFSENAP
101: EMLTTVSHAV PSVNDPPRLD IGTNVRSLFT DQGATALHKA LGFADVSLLN PILVQCKTSG KPFYAIVHRA TGCLVVDFEP VNPTEFPASA AGALQSYKLA
201: AKAISKIQAL PGGSIELLCN TVVKEVFELT GYDRVMAYKF HEDNHGEVFA EITKPGLEPY LGLHYPATDI PQAARFLFMK NKVRMICDVR SRSIKVIEDE
301: ALPFDISLCG SALRAAHSCH LQYMENMNSI ASLVMAVVVN ENEEDDEVGS EQPAQQQKKK ILWGLVVCHH ESPRYVPFPL RYACEFLAQV FAVHVNKEFE
401: VQKQLREKSI LRTQTILSDM LFKEASPLTI VSGAPNIMDL IKCDGAALLY GDKVWRLGNA PTESQIRDLA LWLSEVHMDS TGLSTESLHD AGYPGASALG
501: DSVCGMAVAK INSSDILFWF RSHTAQEIRW GGAKNDPSDQ DDSRRMHPRL SFKAFLEVVK MKSLAWTDSE MDAIHSLQLI LRGTVDGVVK PTGKASLDEQ
601: IGDLKLDGLA ELQAVTSEMV RLMETATVPI LAVDGNGLVN GWNQKAAELT GLRVDDAIGR HILTLVEESS VSVVQRMLYL ALQGKEEKEV RFEVKTHGPK
701: RDDGPVILVV NACASRDLHD DVVGVCFVAQ DVTVHKLVMD KFTRVEGDYM AIIHNPNPLI PPIFGADEFG WCCEWNAAMT KLTGWHREEV LNKMLLGEVF
801: DSSNASCLLK NKDAFVSLCV VINSALAGEE TEKAPFGFFD RSGKYTDCLL SVNRRENEGG LITGVFCFIH IPSHELQQAL QVQQA

Best Arabidopsis Sequence Match ( AT1G09570.1 )
(BLAST)

0001: MSGSRPTQSS EGSRRSRHSA RIIAQTTVDA KLHADFEESG SSFDYSTSVR VTGPVVENQP PRSDKVTTTY LHHIQKGKLI QPFGCLLALD EKTFKVIAYS
0101: ENASELLTMA SHAVPSVGEH PVLGIGTDIR SLFTAPSASA LQKALGFGDV SLLNPILVHC RTSAKPFYAI IHRVTGSIII DFEPVKPYEV PMTAAGALQS
0201: YKLAAKAITR LQSLPSGSME RLCDTMVQEV FELTGYDRVM AYKFHEDDHG EVVSEVTKPG LEPYLGLHYP ATDIPQAARF LFMKNKVRMI VDCNAKHARV
0301: LQDEKLSFDL TLCGSTLRAP HSCHLQYMAN MDSIASLVMA VVVNEEDGEG DAPDATTQPQ KRKRLWGLVV CHNTTPRFVP FPLRYACEFL AQVFAIHVNK
0401: EVELDNQMVE KNILRTQTLL CDMLMRDAPL GIVSQSPNIM DLVKCDGAAL LYKDKIWKLG TTPSEFHLQE IASWLCEYHM DSTGLSTDSL HDAGFPRALS
0501: LGDSVCGMAA VRISSKDMIF WFRSHTAGEV RWGGAKHDPD DRDDARRMHP RSSFKAFLEV VKTRSLPWKD YEMDAIHSLQ LILRNAFKDS ETTDVNTKVI
0601: YSKLNDLKID GIQELEAVTS EMVRLIETAT VPILAVDSDG LVNGWNTKIA ELTGLSVDEA IGKHFLTLVE DSSVEIVKRM LENALEGTEE QNVQFEIKTH
0701: LSRADAGPIS LVVNACASRD LHENVVGVCF VAHDLTGQKT VMDKFTRIEG DYKAIIQNPN PLIPPIFGTD EFGWCTEWNP AMSKLTGLKR EEVIDKMLLG
0801: EVFGTQKSCC RLKNQEAFVN LGIVLNNAVT SQDPEKVSFA FFTRGGKYVE CLLCVSKKLD REGVVTGVFC FLQLASHELQ QALHVQRLAE RTAVKRLKAL
0901: AYIKRQIRNP LSGIMFTRKM IEGTELGPEQ RRILQTSALC QKQLSKILDD SDLESIIEGC LDLEMKEFTL NEVLTASTSQ VMMKSNGKSV RITNETGEEV
1001: MSDTLYGDSI RLQQVLADFM LMAVNFTPSG GQLTVSASLR KDQLGRSVHL ANLEIRLTHT GAGIPEFLLN QMFGTEEDVS EEGLSLMVSR KLVKLMNGDV
1101: QYLRQAGKSS FIITAELAAA NK

Arabidopsis Description

PHYAphytochrome A [Source:TAIR;Acc:AT1G09570]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.