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Rice
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Rice
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • plastid 3
  • vacuole 1
  • cytosol 1
  • mitochondrion 2
  • nucleus 1
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:cytosol, mitochondrion, nucleus, plastid, vacuole
BaCelLo:plastid
EpiLoc:vacuole
iPSORT:plastid
MultiLoc:cytosol
PProwler:mitochondrion
TargetP:mitochondrion
WoLF PSORT:plastid
YLoc:nucleus
 plastid: 21433289
msms PMID: 21433289 doi
S Reiland, J Grossmann, K Baerenfaller, P Gehrig, A Nunes-Nesi, AR Fernie, W Gruissem, S Baginsky
Department of Biology, Plant Biotechnology, ETH Zurich, Zurich, Switzerland.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
OQU91090 Sorghum nucleus 88.3 88.06
Zm00001d033799_P001 Maize cytosol 88.03 87.8
Zm00001d013402_P005 Maize nucleus 87.85 87.62
TraesCS4B01G052000.1 Wheat mitochondrion 67.2 85.65
TraesCS4A01G262900.1 Wheat mitochondrion 84.49 84.34
HORVU4Hr1G008610.2 Barley mitochondrion 84.4 84.25
TraesCS4D01G052200.1 Wheat plastid 84.57 84.13
Zm00001d008542_P001 Maize cytosol 17.91 83.47
HORVU0Hr1G023250.4 Barley cytosol 25.35 82.18
OQU91089 Sorghum cytosol 12.77 80.45
HORVU1Hr1G068750.7 Barley cytosol 25.27 80.28
GSMUA_Achr8P06130_001 Banana cytosol, mitochondrion 66.31 69.58
VIT_14s0060g00100.t01 Wine grape nucleus 65.6 65.84
KRG90417 Soybean nucleus 63.74 64.02
Solyc10g044670.1.1 Tomato extracellular 63.74 64.02
PGSC0003DMT400040772 Potato cytosol 63.65 63.94
CDY06362 Canola cytosol, plastid 63.39 63.78
Bra031672.1-P Field mustard cytosol, plastid 63.03 63.43
CDY22632 Canola cytosol, plastid 63.12 63.4
GSMUA_Achr5P27310_001 Banana cytosol 8.69 63.23
AT1G09570.3 Thale cress cytosol 62.85 62.97
KRG96653 Soybean nucleus 62.32 62.21
CDY50896 Canola endoplasmic reticulum, plastid, vacuole 63.12 61.33
KRH33709 Soybean endoplasmic reticulum, golgi, plastid 63.56 60.2
CDX93501 Canola cytosol 63.12 59.23
Bra020013.1-P Field mustard cytosol 62.94 58.68
KRH68382 Soybean endoplasmic reticulum, plastid, vacuole 48.32 55.95
Os03t0309200-01 Rice nucleus, plasma membrane 47.43 47.77
Os03t0752100-01 Rice cytosol 5.94 29.26
Protein Annotations
Gene3D:1.10.287.130MapMan:26.1.1.1Gene3D:3.30.450.20Gene3D:3.30.450.270Gene3D:3.30.450.40Gene3D:3.30.565.10
EntrezGene:4333930ProteinID:AAM47309.1ProteinID:AAT77854.1EMBL:AB109891ProteinID:ABF98580.1EMBL:AK072482
ProteinID:BAF13010.1ProteinID:BAS86112.1ProteinID:EAZ28394.1InterPro:GAFInterPro:GAF-like_dom_sfGO:GO:0000155
GO:GO:0000160GO:GO:0003674GO:GO:0003676GO:GO:0003723GO:GO:0003729GO:GO:0003824
GO:GO:0004672GO:GO:0004871GO:GO:0005488GO:GO:0005515GO:GO:0005575GO:GO:0005622
GO:GO:0005623GO:GO:0005634GO:GO:0005654GO:GO:0005737GO:GO:0006139GO:GO:0006351
GO:GO:0006355GO:GO:0006412GO:GO:0006464GO:GO:0006468GO:GO:0007154GO:GO:0007165
GO:GO:0007275GO:GO:0008150GO:GO:0008152GO:GO:0009058GO:GO:0009584GO:GO:0009585
GO:GO:0009605GO:GO:0009606GO:GO:0009628GO:GO:0009630GO:GO:0009638GO:GO:0009640
GO:GO:0009791GO:GO:0009881GO:GO:0009987GO:GO:0010018GO:GO:0010161GO:GO:0010201
GO:GO:0010203GO:GO:0010218GO:GO:0016301GO:GO:0016604GO:GO:0016740GO:GO:0017006
GO:GO:0017148GO:GO:0018298GO:GO:0019538GO:GO:0023014GO:GO:0031516GO:GO:0038023
GO:GO:0042802GO:GO:0042803GO:GO:0046685GO:GO:0050896InterPro:HATPase_CInterPro:HATPase_C_sf
InterPro:HisK_dim/PInterPro:His_kinase_domInterPro:IPR000014InterPro:IPR005467InterPro:IPR016132InterPro:IPR029016
InterPro:IPR036890EnsemblPlantsGene:Os03g0719800EnsemblPlants:Os03t0719800-01InterPro:PASInterPro:PAS-like_dom_sfInterPro:PAS_2
InterPro:PAS_foldPFAM:PF00360PFAM:PF00512PFAM:PF00989PFAM:PF01590PFAM:PF02518
PFAM:PF08446PIRSF:PIRSF000084PRINTS:PR01033ScanProsite:PS00245PFscan:PS50046PFscan:PS50109
PFscan:PS50112PANTHER:PTHR43719PANTHER:PTHR43719:SF13InterPro:Phyto_chromo_BSInterPro:Phyto_chromo_attachmentInterPro:Phytochrome
InterPro:Phytochrome_A-EInterPro:Phytochrome_cen-regUniProt:Q10DU0SMART:SM00065SMART:SM00091SMART:SM00387
SMART:SM00388SUPFAM:SSF55781SUPFAM:SSF55785SUPFAM:SSF55874TIGRFAMs:TIGR00229UniParc:UPI00000A270F
RefSeq:XP_015630340.1RefSeq:XP_015630341.1SEG:seg:::
Description
PHYTOCHROME APhytochrome A, Photoreceptor (Os03t0719800-01)
Coordinates
chr3:-:29168197..29176006
Molecular Weight (calculated)
125296.0 Da
IEP (calculated)
6.271
GRAVY (calculated)
-0.154
Length
1128 amino acids
Sequence
(BLAST)
0001: MSSSRPTQCS SSSSRTRQSS RARILAQTTL DAELNAEYEE YGDSFDYSKL VEAQRTTGPE QQARSEKVIA YLHHIQRAKL IQPFGCLLAL DEKTFNVIAL
0101: SENAPEMLTT VSHAVPSVDD PPKLRIGTNV WSLFTDPGAT ALQKALGFAD VSLLNPILVQ CKTSGKPFYA IVHRATGCLV VDFEPVKPTE FPATAAGALQ
0201: SYKLAAKAIS KIQSLPGGSM EVLCNTVVKE LFDLTGYDRV MAYKFHEDDH GEVFAEITKP GLEPYLGLHY PATDIPQAAR FLFMKNKVRM ICDCRARSIK
0301: IIEDESLHLD ISLCGSTLRA PHSCHLQYME NMNSIASLVM AVVVNENEDD DEVGADQPAQ QQKRKKLWGL LVCHHESPRY VPFPLRYACE FLAQVFAVHV
0401: NKEFELERQV REKSILRMQT MLSDMLLRES SPLSIVSGTP NIMDLVKCDG AALLYGGKVW RLQNAPTESQ IRDIAFWLSD VHRDSTGLST DSLHDAGYPG
0501: AAALGDMICG MAVAKINSKD ILFWFRSHTA AEIRWGGAKH DPSDKDDSRR MHPRLSFKAF LEVVKMKSLP WNDYEMDAIH SLQLILRGTL NDDIKPTRAA
0601: SLDNQVGDLK LDGLAELQAV TSEMVRLMET ATVPILAVDS NGLVNGWNQK VAELTGLRVD EAIGRHILTV VEESSVPVVQ RMLYLALQGK EEKEVKFEVK
0701: THGSKRDDGP VILVVNACAS RDLHDHVVGV CFVAQDMTVH KLVMDKFTRV EGDYKAIIHN PSPLIPPIFG ADEFGWCSEW NAAMTKLTGW HRDEVINKML
0801: LGEVFDSTNA SCLVKNKDAF VSLCILINSA LAGDETEKAP FSFFDRNGKY IECLLSVNRK VNADGVITGV FCFIQVPSHE LQHALHVQQA SQQNALTKLK
0901: AYSYMRHAIN NPLSGMLYSR KALKNTGLNE EQMKEVNVAD SCHRQLNKIL SDLDQDSVMN KSSCLDLEMV EFVLQDVFVA AVSQVLITCQ GKGIRVSCNL
1001: PERYMKQTVY GDGVRLQQIL SDFLFVSVKF SPVGGSVEIS CSLTKNSIGE NLHLIDLELR IKHQGKGVPA DLLSQMYEDD NKEQSDEGMS LAVSRNLLRL
1101: MNGDVRHMRE AGMSTFILSV ELASAPAK
Best Arabidopsis Sequence Match ( AT1G09570.3 )
(BLAST)
0001: MEKKMSGSRP TQSSEGSRRS RHSARIIAQT TVDAKLHADF EESGSSFDYS TSVRVTGPVV ENQPPRSDKV TTTYLHHIQK GKLIQPFGCL LALDEKTFKV
0101: IAYSENASEL LTMASHAVPS VGEHPVLGIG TDIRSLFTAP SASALQKALG FGDVSLLNPI LVHCRTSAKP FYAIIHRVTG SIIIDFEPVK PYEVPMTAAG
0201: ALQSYKLAAK AITRLQSLPS GSMERLCDTM VQEVFELTGY DRVMAYKFHE DDHGEVVSEV TKPGLEPYLG LHYPATDIPQ AARFLFMKNK VRMIVDCNAK
0301: HARVLQDEKL SFDLTLCGST LRAPHSCHLQ YMANMDSIAS LVMAVVVNEE DGEGDAPDAT TQPQKRKRLW GLVVCHNTTP RFVPFPLRYA CEFLAQVFAI
0401: HVNKEVELDN QMVEKNILRT QTLLCDMLMR DAPLGIVSQS PNIMDLVKCD GAALLYKDKI WKLGTTPSEF HLQEIASWLC EYHMDSTGLS TDSLHDAGFP
0501: RALSLGDSVC GMAAVRISSK DMIFWFRSHT AGEVRWGGAK HDPDDRDDAR RMHPRSSFKA FLEVVKTRSL PWKDYEMDAI HSLQLILRNA FKDSETTDVN
0601: TKVIYSKLND LKIDGIQELE AVTSEMVRLI ETATVPILAV DSDGLVNGWN TKIAELTGLS VDEAIGKHFL TLVEDSSVEI VKRMLENALE GTEEQNVQFE
0701: IKTHLSRADA GPISLVVNAC ASRDLHENVV GVCFVAHDLT GQKTVMDKFT RIEGDYKAII QNPNPLIPPI FGTDEFGWCT EWNPAMSKLT GLKREEVIDK
0801: MLLGEVFGTQ KSCCRLKNQE AFVNLGIVLN NAVTSQDPEK VSFAFFTRGG KYVECLLCVS KKLDREGVVT GVFCFLQLAS HELQQALHVQ RLAERTAVKR
0901: LKALAYIKRQ IRNPLSGIMF TRKMIEGTEL GPEQRRILQT SALCQKQLSK ILDDSDLESI IEGCLDLEMK EFTLNEVLTA STSQVMMKSN GKSVRITNET
1001: GEEVMSDTLY GDSIRLQQVL ADFMLMAVNF TPSGGQLTVS ASLRKDQLGR SVHLANLEIR LTHTGAGIPE FLLNQMFGTE EDVSEEGLSL MVSRKLVKLM
1101: NGDVQYLRQA GKSSFIITAE LAAANK
Arabidopsis Description
PHYAphytochrome A [Source:TAIR;Acc:AT1G09570]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.