CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
plastid 2
cytosol 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d008542_P001	Maize	cytosol	58.66	43.39
OQU91090	Sorghum	nucleus	98.32	15.56
Zm00001d013402_P005	Maize	nucleus	94.97	15.03
Zm00001d033799_P001	Maize	cytosol	94.41	14.94
Os03t0719800-01	Rice	plastid	80.45	12.77
HORVU4Hr1G008610.2	Barley	mitochondrion	77.65	12.3
TraesCS4A01G262900.1	Wheat	mitochondrion	76.54	12.12
TraesCS4D01G052200.1	Wheat	plastid	73.74	11.64
GSMUA_Achr8P06130_001	Banana	cytosol, mitochondrion	62.57	10.42
CDY06362	Canola	cytosol, plastid	58.1	9.28
VIT_14s0060g00100.t01	Wine grape	nucleus	58.1	9.25
Bra031672.1-P	Field mustard	cytosol, plastid	57.54	9.19
CDY22632	Canola	cytosol, plastid	56.98	9.08
TraesCS4B01G052000.1	Wheat	mitochondrion	44.69	9.04
Solyc10g044670.1.1	Tomato	extracellular	56.42	8.99
PGSC0003DMT400040772	Potato	cytosol	56.42	8.99
KRG90417	Soybean	nucleus	56.42	8.99
AT1G09570.3	Thale cress	cytosol	55.87	8.88
CDY50896	Canola	endoplasmic reticulum, plastid, vacuole	56.42	8.7
KRG96653	Soybean	nucleus	54.75	8.67
KRH33709	Soybean	endoplasmic reticulum, golgi, plastid	56.98	8.56
KRH68382	Soybean	endoplasmic reticulum, plastid, vacuole	45.81	8.42
CDX93501	Canola	cytosol	56.42	8.4
Bra020013.1-P	Field mustard	cytosol	55.87	8.26
EER93439	Sorghum	plastid	39.66	6.26
EER94971	Sorghum	plastid	39.11	5.94
HORVU1Hr1G068750.7	Barley	cytosol	0.0	0.0
HORVU0Hr1G023250.4	Barley	cytosol	0.0	0.0
GSMUA_Achr5P27310_001	Banana	cytosol	0.0	0.0

Protein Annotations

Gene3D:3.30.450.20	MapMan:35.1	UniProt:A0A1Z5S5J4	GO:GO:0000155	GO:GO:0000160	GO:GO:0003674
GO:GO:0003824	GO:GO:0004871	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0006139	GO:GO:0006355	GO:GO:0006464	GO:GO:0007154	GO:GO:0007165
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009584	GO:GO:0009585	GO:GO:0009605
GO:GO:0009628	GO:GO:0009881	GO:GO:0009987	GO:GO:0016301	GO:GO:0016740	GO:GO:0017006
GO:GO:0018298	GO:GO:0019538	GO:GO:0023014	GO:GO:0038023	GO:GO:0042803	InterPro:HATPase_C
EnsemblPlants:OQU91089	ProteinID:OQU91089	ProteinID:OQU91089.1	InterPro:PAS-like_dom_sf	InterPro:PAS_2	PFAM:PF08446
PANTHER:PTHR43719	PANTHER:PTHR43719:SF13	EnsemblPlantsGene:SORBI_3001G111366	SUPFAM:SSF55785	UniParc:UPI000B8B97D4	SEG:seg

Description

hypothetical protein

Coordinates

chr1:+:8691543..8693083

Molecular Weight (calculated)

19590.0 Da

IEP (calculated)

5.294

GRAVY (calculated)

-0.441

Length

179 amino acids

Sequence
(BLAST)

001: MSSSRPAHSS SSSSRTRQSS QARILAQTTL DAELNAEYEE SGDSFDYSKL VEAQRSTPSE QQGRSGKVIA YLQHIQRGKL IQPFGCLLAL DEKSFRVIAF
101: SENAPEMLTT HQGAGVPAEI LSQMYEEDNK EQSEEGLSLL VSRNLLRLMN GNIRHLREAG MSTFILTAEL AAAPSAVGQ

Best Arabidopsis Sequence Match ( AT1G09570.3 )
(BLAST)

0001: MEKKMSGSRP TQSSEGSRRS RHSARIIAQT TVDAKLHADF EESGSSFDYS TSVRVTGPVV ENQPPRSDKV TTTYLHHIQK GKLIQPFGCL LALDEKTFKV
0101: IAYSENASEL LTMASHAVPS VGEHPVLGIG TDIRSLFTAP SASALQKALG FGDVSLLNPI LVHCRTSAKP FYAIIHRVTG SIIIDFEPVK PYEVPMTAAG
0201: ALQSYKLAAK AITRLQSLPS GSMERLCDTM VQEVFELTGY DRVMAYKFHE DDHGEVVSEV TKPGLEPYLG LHYPATDIPQ AARFLFMKNK VRMIVDCNAK
0301: HARVLQDEKL SFDLTLCGST LRAPHSCHLQ YMANMDSIAS LVMAVVVNEE DGEGDAPDAT TQPQKRKRLW GLVVCHNTTP RFVPFPLRYA CEFLAQVFAI
0401: HVNKEVELDN QMVEKNILRT QTLLCDMLMR DAPLGIVSQS PNIMDLVKCD GAALLYKDKI WKLGTTPSEF HLQEIASWLC EYHMDSTGLS TDSLHDAGFP
0501: RALSLGDSVC GMAAVRISSK DMIFWFRSHT AGEVRWGGAK HDPDDRDDAR RMHPRSSFKA FLEVVKTRSL PWKDYEMDAI HSLQLILRNA FKDSETTDVN
0601: TKVIYSKLND LKIDGIQELE AVTSEMVRLI ETATVPILAV DSDGLVNGWN TKIAELTGLS VDEAIGKHFL TLVEDSSVEI VKRMLENALE GTEEQNVQFE
0701: IKTHLSRADA GPISLVVNAC ASRDLHENVV GVCFVAHDLT GQKTVMDKFT RIEGDYKAII QNPNPLIPPI FGTDEFGWCT EWNPAMSKLT GLKREEVIDK
0801: MLLGEVFGTQ KSCCRLKNQE AFVNLGIVLN NAVTSQDPEK VSFAFFTRGG KYVECLLCVS KKLDREGVVT GVFCFLQLAS HELQQALHVQ RLAERTAVKR
0901: LKALAYIKRQ IRNPLSGIMF TRKMIEGTEL GPEQRRILQT SALCQKQLSK ILDDSDLESI IEGCLDLEMK EFTLNEVLTA STSQVMMKSN GKSVRITNET
1001: GEEVMSDTLY GDSIRLQQVL ADFMLMAVNF TPSGGQLTVS ASLRKDQLGR SVHLANLEIR LTHTGAGIPE FLLNQMFGTE EDVSEEGLSL MVSRKLVKLM
1101: NGDVQYLRQA GKSSFIITAE LAAANK

Arabidopsis Description

PHYAphytochrome A [Source:TAIR;Acc:AT1G09570]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.