CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 6
nucleus 1
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH33709	Soybean	endoplasmic reticulum, golgi, plastid	94.21	88.83
VIT_14s0060g00100.t01	Wine grape	nucleus	82.37	82.3
KRG96653	Soybean	nucleus	80.94	80.44
Solyc10g044670.1.1	Tomato	extracellular	78.18	78.18
AT1G09570.3	Thale cress	cytosol	78.36	78.15
CDY06362	Canola	cytosol, plastid	77.47	77.61
PGSC0003DMT400040772	Potato	cytosol	77.47	77.47
Bra031672.1-P	Field mustard	cytosol, plastid	77.29	77.43
CDY22632	Canola	cytosol, plastid	77.2	77.2
CDY50896	Canola	endoplasmic reticulum, plastid, vacuole	78.45	75.88
CDX93501	Canola	cytosol	78.72	73.54
Bra020013.1-P	Field mustard	cytosol	78.36	72.73
KRH68382	Soybean	endoplasmic reticulum, plastid, vacuole	60.73	70.02
GSMUA_Achr8P06130_001	Banana	cytosol, mitochondrion	65.54	68.47
HORVU0Hr1G023250.4	Barley	cytosol	20.84	67.24
HORVU1Hr1G068750.7	Barley	cytosol	21.1	66.76
TraesCS4B01G052000.1	Wheat	mitochondrion	52.09	66.1
GSMUA_Achr5P27310_001	Banana	cytosol	8.82	63.87
OQU91090	Sorghum	nucleus	64.29	63.84
Os03t0719800-01	Rice	plastid	64.02	63.74
Zm00001d013402_P005	Maize	nucleus	64.02	63.57
Zm00001d033799_P001	Maize	cytosol	63.94	63.48
HORVU4Hr1G008610.2	Barley	mitochondrion	63.4	63.01
TraesCS4A01G262900.1	Wheat	mitochondrion	62.87	62.48
TraesCS4D01G052200.1	Wheat	plastid	62.87	62.26
Zm00001d008542_P001	Maize	cytosol	12.64	58.68
OQU91089	Sorghum	cytosol	8.99	56.42
KRH36969	Soybean	nucleus	52.45	51.8
KRH11936	Soybean	nucleus	52.63	51.44
KRH37778	Soybean	nucleus	48.89	49.02
KRH12820	Soybean	cytosol	46.84	47.91

Protein Annotations

Gene3D:1.10.287.130	EntrezGene:100790763	MapMan:26.1.1.1	Gene3D:3.30.450.20	Gene3D:3.30.450.270	Gene3D:3.30.450.40
Gene3D:3.30.565.10	EMBL:ACUP02012612	UniProt:B4YB07	ProteinID:BAG72095.1	ProteinID:BAL45569.1	EMBL:EU428746
InterPro:GAF	InterPro:GAF-like_dom_sf	EnsemblPlantsGene:GLYMA_20G090000	GO:GO:0000155	GO:GO:0000160	GO:GO:0003674
GO:GO:0003824	GO:GO:0004871	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0006464	GO:GO:0007154
GO:GO:0007165	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009584	GO:GO:0009585
GO:GO:0009605	GO:GO:0009628	GO:GO:0009881	GO:GO:0009987	GO:GO:0016301	GO:GO:0016740
GO:GO:0017006	GO:GO:0018298	GO:GO:0019538	GO:GO:0023014	GO:GO:0038023	GO:GO:0042803
GO:GO:0050896	InterPro:HATPase_C	InterPro:HATPase_C_sf	InterPro:HisK_dim/P	InterPro:His_kinase_dom	InterPro:IPR000014
InterPro:IPR000700	InterPro:IPR005467	InterPro:IPR016132	InterPro:IPR029016	InterPro:IPR036890	EnsemblPlants:KRG90417
ProteinID:KRG90417	ProteinID:KRG90417.1	InterPro:PAS	InterPro:PAS-assoc_C	InterPro:PAS-like_dom_sf	InterPro:PAS_2
InterPro:PAS_fold	PFAM:PF00360	PFAM:PF00989	PFAM:PF01590	PFAM:PF02518	PFAM:PF08446
PIRSF:PIRSF000084	PRINTS:PR01033	ScanProsite:PS00245	PFscan:PS50046	PFscan:PS50109	PFscan:PS50112
PFscan:PS50113	PANTHER:PTHR43719	PANTHER:PTHR43719:SF13	InterPro:Phyto_chromo_BS	InterPro:Phyto_chromo_attachment	InterPro:Phytochrome
InterPro:Phytochrome_A-E	InterPro:Phytochrome_cen-reg	SMART:SM00065	SMART:SM00091	SMART:SM00387	SMART:SM00388
SUPFAM:SSF55781	SUPFAM:SSF55785	SUPFAM:SSF55874	TIGRFAMs:TIGR00229	UniParc:UPI00017B5D0E	SEG:seg

Description

hypothetical protein

Coordinates

chr20:+:33234705..33240379

Molecular Weight (calculated)

124217.0 Da

IEP (calculated)

6.642

GRAVY (calculated)

-0.062

Length

1123 amino acids

Sequence
(BLAST)

0001: MSTSRPSQSS SNSGRSRRSA RAMALATVDA KLHATFEESG SSFDYSSSVR ISGTADGVNQ PRHDKVTTAY LHHMQKGKMI QPFGCLLALD EKTCKVIAYS
0101: ENAPEMLTMV SHAVPSVGDH PALGIGTDIK TLFTAPSASA LQKALGFAEV LLLNPVLIHC KTSGKPFYAI IHRVTGSMII DFEPVKPYEV PMTAAGALQS
0201: YKLAAKAITR LQSLPSGSME RLCDTMVQEV FELTGYDRVM AYKFHEDDHG EVIAEITKPG LEPYLGLHYP ATDIPQASRF LFMKNKVRMI VDCHAKHVRV
0301: LQDEKLPFDL TLCGSTLRAP HSCHAQYMAN MDSIASLVMA VVVNDNEEDG DTDAIQPQKR KRLWGLVVCH NTTPRFVPFP LRYACEFLAQ VFAIHVNKEI
0401: ELEYQIIEKN ILRTQTLLCD LVMRDAPLGI VSESPNIMDL VKCDGAALIY KNKVWRLGVT PSESQIREIA FWLSEYHMDS TGFSTDSLSD AGFPSALSLG
0501: DVVCGMAAVR VTAKDVVFWF RSHTAAEIRW GGAKHEAGEK DDGRRMHPRS SFKVFLDVVK ARSLPWKEYE IDAMHSLQLI LRNAFKDTES MDLNTKAINT
0601: RLSDLKIEGM QELEAVTSEI VRLIETATVP ILAVDVDGLV NGWNIKIAEL TGLPVGEAMG KHLLTLVEDS STDRVKKMLN LALLGEEEKN VQFEIKTHGS
0701: KMDSGPISLV VNACASRDLR DNVVGVCFVA HDITAQKNVM DKFTRIEGDY KAIVQNRNPL IPPIFGTDEF GWCCEWNPAM TKLTGWKREE VMDKMLLGEL
0801: FGTHMAACRL KNQEAFVNLG VVLNKAMTGL ETEKVPFGFF ARNGKYVECL LSVSKKLDVE GLVTGVFCFL QLASPELQQA LHIQRLSEQT ALKRLNALSY
0901: MKRQIRNPLC GIIFSRKMLE GTALGTEQKQ LLRTSAQCQQ QLSKILDDSD LDSIIDGYLD LEMAEFTLHE VLVTSLSQVM TKSNGKSIRI VNDVAEQIVM
1001: ETLYGDSLRL QQVLADFLLI SINFTPNGGQ VVVAGTLTKE QLGKSVHLVK LELSITHGGS GVPEALLNQM FGNNGLESEE GISLLISRKL LKLMNGDVRY
1101: LREAGKSAFI LSAELAAAHN LKG

Best Arabidopsis Sequence Match ( AT1G09570.3 )
(BLAST)

0001: MEKKMSGSRP TQSSEGSRRS RHSARIIAQT TVDAKLHADF EESGSSFDYS TSVRVTGPVV ENQPPRSDKV TTTYLHHIQK GKLIQPFGCL LALDEKTFKV
0101: IAYSENASEL LTMASHAVPS VGEHPVLGIG TDIRSLFTAP SASALQKALG FGDVSLLNPI LVHCRTSAKP FYAIIHRVTG SIIIDFEPVK PYEVPMTAAG
0201: ALQSYKLAAK AITRLQSLPS GSMERLCDTM VQEVFELTGY DRVMAYKFHE DDHGEVVSEV TKPGLEPYLG LHYPATDIPQ AARFLFMKNK VRMIVDCNAK
0301: HARVLQDEKL SFDLTLCGST LRAPHSCHLQ YMANMDSIAS LVMAVVVNEE DGEGDAPDAT TQPQKRKRLW GLVVCHNTTP RFVPFPLRYA CEFLAQVFAI
0401: HVNKEVELDN QMVEKNILRT QTLLCDMLMR DAPLGIVSQS PNIMDLVKCD GAALLYKDKI WKLGTTPSEF HLQEIASWLC EYHMDSTGLS TDSLHDAGFP
0501: RALSLGDSVC GMAAVRISSK DMIFWFRSHT AGEVRWGGAK HDPDDRDDAR RMHPRSSFKA FLEVVKTRSL PWKDYEMDAI HSLQLILRNA FKDSETTDVN
0601: TKVIYSKLND LKIDGIQELE AVTSEMVRLI ETATVPILAV DSDGLVNGWN TKIAELTGLS VDEAIGKHFL TLVEDSSVEI VKRMLENALE GTEEQNVQFE
0701: IKTHLSRADA GPISLVVNAC ASRDLHENVV GVCFVAHDLT GQKTVMDKFT RIEGDYKAII QNPNPLIPPI FGTDEFGWCT EWNPAMSKLT GLKREEVIDK
0801: MLLGEVFGTQ KSCCRLKNQE AFVNLGIVLN NAVTSQDPEK VSFAFFTRGG KYVECLLCVS KKLDREGVVT GVFCFLQLAS HELQQALHVQ RLAERTAVKR
0901: LKALAYIKRQ IRNPLSGIMF TRKMIEGTEL GPEQRRILQT SALCQKQLSK ILDDSDLESI IEGCLDLEMK EFTLNEVLTA STSQVMMKSN GKSVRITNET
1001: GEEVMSDTLY GDSIRLQQVL ADFMLMAVNF TPSGGQLTVS ASLRKDQLGR SVHLANLEIR LTHTGAGIPE FLLNQMFGTE EDVSEEGLSL MVSRKLVKLM
1101: NGDVQYLRQA GKSSFIITAE LAAANK

Arabidopsis Description

PHYAphytochrome A [Source:TAIR;Acc:AT1G09570]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.