Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- plastid 4
- cytosol 1
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| extracellular:
29876421
|
msms PMID:
29876421
doi
Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400040772 | Potato | cytosol | 96.88 | 96.88 |
| VIT_14s0060g00100.t01 | Wine grape | nucleus | 83.7 | 83.63 |
| AT1G09570.3 | Thale cress | cytosol | 78.9 | 78.69 |
| CDY22632 | Canola | cytosol, plastid | 78.54 | 78.54 |
| CDY06362 | Canola | cytosol, plastid | 78.27 | 78.41 |
| Bra031672.1-P | Field mustard | cytosol, plastid | 78.18 | 78.32 |
| KRG90417 | Soybean | nucleus | 78.18 | 78.18 |
| CDY50896 | Canola | endoplasmic reticulum, plastid, vacuole | 79.16 | 76.57 |
| KRG96653 | Soybean | nucleus | 74.53 | 74.07 |
| CDX93501 | Canola | cytosol | 79.25 | 74.04 |
| Bra020013.1-P | Field mustard | cytosol | 79.07 | 73.39 |
| KRH33709 | Soybean | endoplasmic reticulum, golgi, plastid | 76.76 | 72.38 |
| GSMUA_Achr8P06130_001 | Banana | cytosol, mitochondrion | 66.07 | 69.02 |
| HORVU0Hr1G023250.4 | Barley | cytosol | 20.84 | 67.24 |
| HORVU1Hr1G068750.7 | Barley | cytosol | 21.1 | 66.76 |
| TraesCS4B01G052000.1 | Wheat | mitochondrion | 51.74 | 65.65 |
| KRH68382 | Soybean | endoplasmic reticulum, plastid, vacuole | 56.28 | 64.89 |
| GSMUA_Achr5P27310_001 | Banana | cytosol | 8.82 | 63.87 |
| OQU91090 | Sorghum | nucleus | 64.2 | 63.75 |
| Os03t0719800-01 | Rice | plastid | 64.02 | 63.74 |
| Zm00001d033799_P001 | Maize | cytosol | 63.85 | 63.4 |
| Zm00001d013402_P005 | Maize | nucleus | 63.67 | 63.22 |
| HORVU4Hr1G008610.2 | Barley | mitochondrion | 63.05 | 62.65 |
| TraesCS4A01G262900.1 | Wheat | mitochondrion | 62.78 | 62.39 |
| TraesCS4D01G052200.1 | Wheat | plastid | 62.6 | 61.99 |
| Zm00001d008542_P001 | Maize | cytosol | 13.0 | 60.33 |
| OQU91089 | Sorghum | cytosol | 8.99 | 56.42 |
| Solyc07g045480.2.1 | Tomato | plastid | 54.59 | 54.83 |
| Solyc01g059870.2.1 | Tomato | cytosol | 52.8 | 52.43 |
| Solyc05g053410.2.1 | Tomato | nucleus, plastid | 50.67 | 50.76 |
| Solyc02g071260.2.1 | Tomato | cytosol, plastid | 48.44 | 47.85 |
Protein Annotations
Description
Phytochrome [Source:UniProtKB/TrEMBL;Acc:Q41331]
Coordinates
chr10:+:27379801..27384675
Molecular Weight (calculated)
124667.0 Da
IEP (calculated)
6.026
GRAVY (calculated)
-0.144
Length
1123 amino acids
Sequence
(BLAST)
(BLAST)
0001: MSSSRPSQSS TTSSRSKHSA RIVAQTSIDA KLHADFEESG DSFDYSSSVR VTSVAGDEEK PKSDKVTTAY LHQIQKGKFI QPFGCLLALD EKTLKVIAFS
0101: ENAPEMLTMV SHAVPSVGEH PVLGIGTDIR TIFTGPSGAA LQKALGFGEV SLLNPVLVHC KNSGKPFYAI VHRVTGSLIL DFEPVKPYEV PMTAAGALQS
0201: YKLAAKAITR LQSLPSGSME RLCDTMVQEV FELTGYDRVM GYKFHEDDHG EVVSEITKPG LEPYLGLHYP ATDIPQAARF LFMKNKVRMI CDCRAKHVKV
0301: VQDEKLPFDL TLCGSTLRAP HYCHLQYMEN MNSIASLVMA VVVNDGDEEG ESSDSSQSQK RKRLWGLVVC HNTTPRFVPF PLRYACEFLA QVFAIHVNKE
0401: LELENQFLEK NILRTQTLLC DMLMRDAPLG IVSQSPNIMD LVKCDGAALL YKNKIHRLGM NPSDFQLQDI VSWLCEYHTD STGLSTDSLY DAGFPGALAL
0501: GDAVCGMAAV RISDKDWLFW FRSHTAAEVR WGGAKHEPGE KDDGRKMHPR SSFKAFLEVV KTRSIPWKDY EMDAIHSLQL ILRNAFKDAE VVNSNTNSIY
0601: KKLNDLKIDG MQELESVTAE MVRLIETALV PILAVDVDGQ VNGWNTKIAE LTGLPVDEAI GKHLLTLVED SSVDTVNKML ELALQGKEEK NVEFEIKTHG
0701: PSRDSSPISL IVNACASKDV RDNVVGVCFM AHDITGQKSI MDKFTRIEGD YRAIIQNPHP LIPPIFGTDQ FGWCSEWNTA MTKLTGWRRD DVMDKMLLGE
0801: VFGTQAACCR LKNQEAFVNF GVVLNNAITG QESEKIPFGF FARYGKYVEC LLCVSKRLDK EGAVTGLFCF LQLASHELQQ ALYVQRLSEQ TALKRLKVLA
0901: YIRRQIRNPL SGIIFSRKML EGTSLGEEQK NILHTSAQCQ RQLNKILDDT DLDSIIDGYL DLEMLEFKLH EVLVASISQV MMKSNGKNIM ISNDMVEDLL
1001: NETLYGDSPR LQQVLANFLL VSVNATPSGG QLSISGRLTK DRIGESVQLA LLEFRIRHTG GGVPEELLGQ MFGSEADASE EGISLLVSRK LVKLMNGEVQ
1101: YLREAGQSTF IISVELAVAT NSS
0101: ENAPEMLTMV SHAVPSVGEH PVLGIGTDIR TIFTGPSGAA LQKALGFGEV SLLNPVLVHC KNSGKPFYAI VHRVTGSLIL DFEPVKPYEV PMTAAGALQS
0201: YKLAAKAITR LQSLPSGSME RLCDTMVQEV FELTGYDRVM GYKFHEDDHG EVVSEITKPG LEPYLGLHYP ATDIPQAARF LFMKNKVRMI CDCRAKHVKV
0301: VQDEKLPFDL TLCGSTLRAP HYCHLQYMEN MNSIASLVMA VVVNDGDEEG ESSDSSQSQK RKRLWGLVVC HNTTPRFVPF PLRYACEFLA QVFAIHVNKE
0401: LELENQFLEK NILRTQTLLC DMLMRDAPLG IVSQSPNIMD LVKCDGAALL YKNKIHRLGM NPSDFQLQDI VSWLCEYHTD STGLSTDSLY DAGFPGALAL
0501: GDAVCGMAAV RISDKDWLFW FRSHTAAEVR WGGAKHEPGE KDDGRKMHPR SSFKAFLEVV KTRSIPWKDY EMDAIHSLQL ILRNAFKDAE VVNSNTNSIY
0601: KKLNDLKIDG MQELESVTAE MVRLIETALV PILAVDVDGQ VNGWNTKIAE LTGLPVDEAI GKHLLTLVED SSVDTVNKML ELALQGKEEK NVEFEIKTHG
0701: PSRDSSPISL IVNACASKDV RDNVVGVCFM AHDITGQKSI MDKFTRIEGD YRAIIQNPHP LIPPIFGTDQ FGWCSEWNTA MTKLTGWRRD DVMDKMLLGE
0801: VFGTQAACCR LKNQEAFVNF GVVLNNAITG QESEKIPFGF FARYGKYVEC LLCVSKRLDK EGAVTGLFCF LQLASHELQQ ALYVQRLSEQ TALKRLKVLA
0901: YIRRQIRNPL SGIIFSRKML EGTSLGEEQK NILHTSAQCQ RQLNKILDDT DLDSIIDGYL DLEMLEFKLH EVLVASISQV MMKSNGKNIM ISNDMVEDLL
1001: NETLYGDSPR LQQVLANFLL VSVNATPSGG QLSISGRLTK DRIGESVQLA LLEFRIRHTG GGVPEELLGQ MFGSEADASE EGISLLVSRK LVKLMNGEVQ
1101: YLREAGQSTF IISVELAVAT NSS
0001: MEKKMSGSRP TQSSEGSRRS RHSARIIAQT TVDAKLHADF EESGSSFDYS TSVRVTGPVV ENQPPRSDKV TTTYLHHIQK GKLIQPFGCL LALDEKTFKV
0101: IAYSENASEL LTMASHAVPS VGEHPVLGIG TDIRSLFTAP SASALQKALG FGDVSLLNPI LVHCRTSAKP FYAIIHRVTG SIIIDFEPVK PYEVPMTAAG
0201: ALQSYKLAAK AITRLQSLPS GSMERLCDTM VQEVFELTGY DRVMAYKFHE DDHGEVVSEV TKPGLEPYLG LHYPATDIPQ AARFLFMKNK VRMIVDCNAK
0301: HARVLQDEKL SFDLTLCGST LRAPHSCHLQ YMANMDSIAS LVMAVVVNEE DGEGDAPDAT TQPQKRKRLW GLVVCHNTTP RFVPFPLRYA CEFLAQVFAI
0401: HVNKEVELDN QMVEKNILRT QTLLCDMLMR DAPLGIVSQS PNIMDLVKCD GAALLYKDKI WKLGTTPSEF HLQEIASWLC EYHMDSTGLS TDSLHDAGFP
0501: RALSLGDSVC GMAAVRISSK DMIFWFRSHT AGEVRWGGAK HDPDDRDDAR RMHPRSSFKA FLEVVKTRSL PWKDYEMDAI HSLQLILRNA FKDSETTDVN
0601: TKVIYSKLND LKIDGIQELE AVTSEMVRLI ETATVPILAV DSDGLVNGWN TKIAELTGLS VDEAIGKHFL TLVEDSSVEI VKRMLENALE GTEEQNVQFE
0701: IKTHLSRADA GPISLVVNAC ASRDLHENVV GVCFVAHDLT GQKTVMDKFT RIEGDYKAII QNPNPLIPPI FGTDEFGWCT EWNPAMSKLT GLKREEVIDK
0801: MLLGEVFGTQ KSCCRLKNQE AFVNLGIVLN NAVTSQDPEK VSFAFFTRGG KYVECLLCVS KKLDREGVVT GVFCFLQLAS HELQQALHVQ RLAERTAVKR
0901: LKALAYIKRQ IRNPLSGIMF TRKMIEGTEL GPEQRRILQT SALCQKQLSK ILDDSDLESI IEGCLDLEMK EFTLNEVLTA STSQVMMKSN GKSVRITNET
1001: GEEVMSDTLY GDSIRLQQVL ADFMLMAVNF TPSGGQLTVS ASLRKDQLGR SVHLANLEIR LTHTGAGIPE FLLNQMFGTE EDVSEEGLSL MVSRKLVKLM
1101: NGDVQYLRQA GKSSFIITAE LAAANK
0101: IAYSENASEL LTMASHAVPS VGEHPVLGIG TDIRSLFTAP SASALQKALG FGDVSLLNPI LVHCRTSAKP FYAIIHRVTG SIIIDFEPVK PYEVPMTAAG
0201: ALQSYKLAAK AITRLQSLPS GSMERLCDTM VQEVFELTGY DRVMAYKFHE DDHGEVVSEV TKPGLEPYLG LHYPATDIPQ AARFLFMKNK VRMIVDCNAK
0301: HARVLQDEKL SFDLTLCGST LRAPHSCHLQ YMANMDSIAS LVMAVVVNEE DGEGDAPDAT TQPQKRKRLW GLVVCHNTTP RFVPFPLRYA CEFLAQVFAI
0401: HVNKEVELDN QMVEKNILRT QTLLCDMLMR DAPLGIVSQS PNIMDLVKCD GAALLYKDKI WKLGTTPSEF HLQEIASWLC EYHMDSTGLS TDSLHDAGFP
0501: RALSLGDSVC GMAAVRISSK DMIFWFRSHT AGEVRWGGAK HDPDDRDDAR RMHPRSSFKA FLEVVKTRSL PWKDYEMDAI HSLQLILRNA FKDSETTDVN
0601: TKVIYSKLND LKIDGIQELE AVTSEMVRLI ETATVPILAV DSDGLVNGWN TKIAELTGLS VDEAIGKHFL TLVEDSSVEI VKRMLENALE GTEEQNVQFE
0701: IKTHLSRADA GPISLVVNAC ASRDLHENVV GVCFVAHDLT GQKTVMDKFT RIEGDYKAII QNPNPLIPPI FGTDEFGWCT EWNPAMSKLT GLKREEVIDK
0801: MLLGEVFGTQ KSCCRLKNQE AFVNLGIVLN NAVTSQDPEK VSFAFFTRGG KYVECLLCVS KKLDREGVVT GVFCFLQLAS HELQQALHVQ RLAERTAVKR
0901: LKALAYIKRQ IRNPLSGIMF TRKMIEGTEL GPEQRRILQT SALCQKQLSK ILDDSDLESI IEGCLDLEMK EFTLNEVLTA STSQVMMKSN GKSVRITNET
1001: GEEVMSDTLY GDSIRLQQVL ADFMLMAVNF TPSGGQLTVS ASLRKDQLGR SVHLANLEIR LTHTGAGIPE FLLNQMFGTE EDVSEEGLSL MVSRKLVKLM
1101: NGDVQYLRQA GKSSFIITAE LAAANK
Arabidopsis Description
PHYAphytochrome A [Source:TAIR;Acc:AT1G09570]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.