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Sorghum
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Sorghum
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • plastid 2
  • cytosol 1
  • mitochondrion 2
  • nucleus 2
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:cytosol, mitochondrion, nucleus, plastid
BaCelLo:plastid
iPSORT:plastid
MultiLoc:cytosol
PProwler:mitochondrion
TargetP:mitochondrion
WoLF PSORT:nucleus
YLoc:nucleus
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
OQU91089 Sorghum cytosol 15.56 98.32
Zm00001d013402_P005 Maize nucleus 96.73 96.73
Zm00001d033799_P001 Maize cytosol 96.11 96.11
Zm00001d008542_P001 Maize cytosol 19.01 88.84
Os03t0719800-01 Rice plastid 88.06 88.3
TraesCS4B01G052000.1 Wheat mitochondrion 66.84 85.42
HORVU4Hr1G008610.2 Barley mitochondrion 84.88 84.96
TraesCS4A01G262900.1 Wheat mitochondrion 84.62 84.69
TraesCS4D01G052200.1 Wheat plastid 84.17 83.95
HORVU0Hr1G023250.4 Barley cytosol 25.38 82.47
HORVU1Hr1G068750.7 Barley cytosol 25.38 80.85
GSMUA_Achr8P06130_001 Banana cytosol, mitochondrion 65.52 68.93
VIT_14s0060g00100.t01 Wine grape nucleus 65.08 65.48
CDY06362 Canola cytosol, plastid 63.93 64.5
KRG90417 Soybean nucleus 63.84 64.29
Solyc10g044670.1.1 Tomato extracellular 63.75 64.2
PGSC0003DMT400040772 Potato cytosol 63.66 64.11
Bra031672.1-P Field mustard cytosol, plastid 63.4 63.96
GSMUA_Achr5P27310_001 Banana cytosol 8.75 63.87
CDY22632 Canola cytosol, plastid 63.13 63.58
AT1G09570.3 Thale cress cytosol 63.22 63.5
KRG96653 Soybean nucleus 62.07 62.12
CDY50896 Canola endoplasmic reticulum, plastid, vacuole 63.31 61.67
KRH33709 Soybean endoplasmic reticulum, golgi, plastid 63.66 60.45
CDX93501 Canola cytosol 63.4 59.65
Bra020013.1-P Field mustard cytosol 63.22 59.09
KRH68382 Soybean endoplasmic reticulum, plastid, vacuole 47.92 55.65
EER93439 Sorghum plastid 51.19 51.01
EER94971 Sorghum plastid 48.45 46.52
Protein Annotations
Gene3D:1.10.287.130MapMan:26.1.1.1Gene3D:3.30.450.20Gene3D:3.30.450.270Gene3D:3.30.450.40Gene3D:3.30.565.10
UniProt:A0A1Z5S590InterPro:GAFInterPro:GAF-like_dom_sfGO:GO:0000155GO:GO:0000160GO:GO:0003674
GO:GO:0003824GO:GO:0004871GO:GO:0005488GO:GO:0005515GO:GO:0005575GO:GO:0005622
GO:GO:0005623GO:GO:0006139GO:GO:0006351GO:GO:0006355GO:GO:0006464GO:GO:0007154
GO:GO:0007165GO:GO:0008150GO:GO:0008152GO:GO:0009058GO:GO:0009584GO:GO:0009585
GO:GO:0009605GO:GO:0009628GO:GO:0009881GO:GO:0009987GO:GO:0016301GO:GO:0016740
GO:GO:0017006GO:GO:0018298GO:GO:0019538GO:GO:0023014GO:GO:0038023GO:GO:0042803
GO:GO:0050896InterPro:HATPase_CInterPro:HATPase_C_sfInterPro:HisK_dim/PInterPro:His_kinase_domInterPro:IPR000014
InterPro:IPR005467InterPro:IPR016132InterPro:IPR029016InterPro:IPR036890EnsemblPlants:OQU91090ProteinID:OQU91090
ProteinID:OQU91090.1InterPro:PASInterPro:PAS-like_dom_sfInterPro:PAS_2InterPro:PAS_foldPFAM:PF00360
PFAM:PF00512PFAM:PF00989PFAM:PF01590PFAM:PF02518PFAM:PF08446PIRSF:PIRSF000084
PRINTS:PR01033ScanProsite:PS00245PFscan:PS50046PFscan:PS50109PFscan:PS50112PANTHER:PTHR43719
PANTHER:PTHR43719:SF13InterPro:Phyto_chromo_BSInterPro:Phyto_chromo_attachmentInterPro:PhytochromeInterPro:Phytochrome_A-EInterPro:Phytochrome_cen-reg
SMART:SM00065SMART:SM00091SMART:SM00387SMART:SM00388EnsemblPlantsGene:SORBI_3001G111500SUPFAM:SSF55781
SUPFAM:SSF55785SUPFAM:SSF55874TIGRFAMs:TIGR00229UniParc:UPI000B424237SEG:seg:
Description
hypothetical protein
Coordinates
chr1:+:8708287..8721152
Molecular Weight (calculated)
125115.0 Da
IEP (calculated)
6.083
GRAVY (calculated)
-0.152
Length
1131 amino acids
Sequence
(BLAST)
0001: MSSSRPAHSS SSSSRTRQSS RARILAQTTL DAELNAEYEE SGDSFDYSKL VEAQRSTPSE QQGRSGKVIA YLQHIQRGKL IQPFGCLLAL DEKSFRVIAF
0101: SENAPEMLTT VSHAVPNVDD PPKLGIGTNV RSLFTDPGAT ALQKALGFAD VSLLNPILVQ CKTSGKPFYA IVHRATGCLV VDFEPVKPTE FPATAAGALQ
0201: SYKLAAKAIS KIQSLPGGSM EALCNTVVKE VFELTGYDRV MAYKFHEDEH GEVFAEITKP GIEPYLGLHY PATDIPQAAR FLFMKNKVRM ICDCRAKSVK
0301: IIEDEALSID ISLCGSTLRA PHSCHLQYME NMNSIASLVM AVVVNENEED DEPGPEQPPQ QQKKKRLWGL IVCHHESPRY VPFPLRYACE FLAQVFAVHV
0401: NKEFELEKQI REKSILRMQT MLSDMLFKEA SPLSIVSGSP NIMDLVKCDG AALLYGDKVW RLQTAPTESQ IRDIAFWLSE VHGDSTGLST DSLQDAGYPG
0501: AASLGDMICG MAVAKITSKD ILFWFRSHTA AEIKWGGAKH DPSDKDDNRR MHPRLSFKAF LEVVKMKSLP WSDYEMDAIH SLQLILRGTL NDALKPVQAS
0601: GLDNQIGDLK LDGLAELQAV TSEMVRLMET ATVPILAVDG NGLVNGWNQK VAELSGLRVD EAIGRHILTL VEDSSVSIVQ RMLYLALQGK EEKEVRFELK
0701: THGSKRDDGP VILVVNACAS RDLHDHVVGV CFVAQDMTVH KLVMDKFTRV EGDYKAIIHN PNPLIPPIFG ADQFGWCSEW NVAMTKLTGW HRDEVIDKML
0801: LGEVFDSSNA SCLLKSKDDF VRLCIIINSA LAGEEAENAP FGLFDRNGKY IECLLSVNRK VNADGVVTGV FCFIHVPSDD LQHALHVQQA SEQTAQRRLK
0901: AFSYMRHAIN KPLSGMLYSR ETLKSTGLNE EQMRQVHVAD SCHRQLNKIL ADLDQDNITD KSSCLDLDMA EFVLEDVVVS AVSQVLIGCQ GKGIRVACNL
1001: PERFMKQKVY GDGIRLQQIL SDFLFVSVKF SPVGGSVDIS SKLTKNSIGE NLHLIDFELR IKHQGAGVPA EILSQMYEED NKEQSEEGLS LLVSRNLLRL
1101: MNGNIRHLRE AGMSTFILTA ELAAAPSAVG Q
Best Arabidopsis Sequence Match ( AT1G09570.3 )
(BLAST)
0001: MEKKMSGSRP TQSSEGSRRS RHSARIIAQT TVDAKLHADF EESGSSFDYS TSVRVTGPVV ENQPPRSDKV TTTYLHHIQK GKLIQPFGCL LALDEKTFKV
0101: IAYSENASEL LTMASHAVPS VGEHPVLGIG TDIRSLFTAP SASALQKALG FGDVSLLNPI LVHCRTSAKP FYAIIHRVTG SIIIDFEPVK PYEVPMTAAG
0201: ALQSYKLAAK AITRLQSLPS GSMERLCDTM VQEVFELTGY DRVMAYKFHE DDHGEVVSEV TKPGLEPYLG LHYPATDIPQ AARFLFMKNK VRMIVDCNAK
0301: HARVLQDEKL SFDLTLCGST LRAPHSCHLQ YMANMDSIAS LVMAVVVNEE DGEGDAPDAT TQPQKRKRLW GLVVCHNTTP RFVPFPLRYA CEFLAQVFAI
0401: HVNKEVELDN QMVEKNILRT QTLLCDMLMR DAPLGIVSQS PNIMDLVKCD GAALLYKDKI WKLGTTPSEF HLQEIASWLC EYHMDSTGLS TDSLHDAGFP
0501: RALSLGDSVC GMAAVRISSK DMIFWFRSHT AGEVRWGGAK HDPDDRDDAR RMHPRSSFKA FLEVVKTRSL PWKDYEMDAI HSLQLILRNA FKDSETTDVN
0601: TKVIYSKLND LKIDGIQELE AVTSEMVRLI ETATVPILAV DSDGLVNGWN TKIAELTGLS VDEAIGKHFL TLVEDSSVEI VKRMLENALE GTEEQNVQFE
0701: IKTHLSRADA GPISLVVNAC ASRDLHENVV GVCFVAHDLT GQKTVMDKFT RIEGDYKAII QNPNPLIPPI FGTDEFGWCT EWNPAMSKLT GLKREEVIDK
0801: MLLGEVFGTQ KSCCRLKNQE AFVNLGIVLN NAVTSQDPEK VSFAFFTRGG KYVECLLCVS KKLDREGVVT GVFCFLQLAS HELQQALHVQ RLAERTAVKR
0901: LKALAYIKRQ IRNPLSGIMF TRKMIEGTEL GPEQRRILQT SALCQKQLSK ILDDSDLESI IEGCLDLEMK EFTLNEVLTA STSQVMMKSN GKSVRITNET
1001: GEEVMSDTLY GDSIRLQQVL ADFMLMAVNF TPSGGQLTVS ASLRKDQLGR SVHLANLEIR LTHTGAGIPE FLLNQMFGTE EDVSEEGLSL MVSRKLVKLM
1101: NGDVQYLRQA GKSSFIITAE LAAANK
Arabidopsis Description
PHYAphytochrome A [Source:TAIR;Acc:AT1G09570]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.