CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 7
nucleus 2
cytosol 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG90417	Soybean	nucleus	80.44	80.94
VIT_14s0060g00100.t01	Wine grape	nucleus	77.61	78.02
KRH68382	Soybean	endoplasmic reticulum, plastid, vacuole	66.99	77.72
KRH33709	Soybean	endoplasmic reticulum, golgi, plastid	78.94	74.89
Solyc10g044670.1.1	Tomato	extracellular	74.07	74.53
PGSC0003DMT400040772	Potato	cytosol	74.07	74.53
AT1G09570.3	Thale cress	cytosol	73.72	73.98
CDY06362	Canola	cytosol, plastid	73.27	73.86
Bra031672.1-P	Field mustard	cytosol, plastid	73.1	73.68
CDY22632	Canola	cytosol, plastid	73.1	73.55
CDY50896	Canola	endoplasmic reticulum, plastid, vacuole	73.89	71.92
CDX93501	Canola	cytosol	74.07	69.63
Bra020013.1-P	Field mustard	cytosol	73.89	69.01
HORVU0Hr1G023250.4	Barley	cytosol	20.8	67.53
HORVU1Hr1G068750.7	Barley	cytosol	21.06	67.04
GSMUA_Achr8P06130_001	Banana	cytosol, mitochondrion	63.45	66.7
TraesCS4B01G052000.1	Wheat	mitochondrion	50.71	64.75
Os03t0719800-01	Rice	plastid	62.21	62.32
Zm00001d013402_P005	Maize	nucleus	62.21	62.16
OQU91090	Sorghum	nucleus	62.12	62.07
Zm00001d033799_P001	Maize	cytosol	62.04	61.98
GSMUA_Achr5P27310_001	Banana	cytosol	8.41	61.29
HORVU4Hr1G008610.2	Barley	mitochondrion	61.15	61.15
TraesCS4A01G262900.1	Wheat	mitochondrion	61.06	61.06
TraesCS4D01G052200.1	Wheat	plastid	60.97	60.76
Zm00001d008542_P001	Maize	cytosol	12.39	57.85
OQU91089	Sorghum	cytosol	8.67	54.75
KRH11936	Soybean	nucleus	51.15	50.3
KRH36969	Soybean	nucleus	50.53	50.22
KRH37778	Soybean	nucleus	47.88	48.3
KRH12820	Soybean	cytosol	46.28	47.63

Protein Annotations

EntrezGene:100791098	MapMan:26.1.1.1	Gene3D:3.30.450.20	Gene3D:3.30.450.270	Gene3D:3.30.450.40	Gene3D:3.30.565.10
EMBL:ACUP02012162	ProteinID:BAH57342.1	ProteinID:BAH57344.1	ProteinID:BAN82697.1	ProteinID:BAN82698.1	ProteinID:BAN82699.1
ProteinID:BAN82700.1	ProteinID:BAN82701.1	ProteinID:BAN82705.1	ProteinID:BAN82706.1	ProteinID:BAN82707.1	ProteinID:BAN82708.1
ProteinID:BAN82712.1	ProteinID:BAN82715.1	ProteinID:BAN82716.1	ProteinID:BAN82718.1	ProteinID:BAN82719.1	ProteinID:BAN82720.1
ProteinID:BAN82723.1	ProteinID:BAN82727.1	UniProt:C1PHB8	InterPro:GAF	InterPro:GAF-like_dom_sf	EnsemblPlantsGene:GLYMA_19G224200
GO:GO:0000155	GO:GO:0000160	GO:GO:0003674	GO:GO:0003824	GO:GO:0004871	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0006464	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009584	GO:GO:0009585	GO:GO:0009605	GO:GO:0009628	GO:GO:0009881
GO:GO:0009987	GO:GO:0016301	GO:GO:0016740	GO:GO:0017006	GO:GO:0018298	GO:GO:0019538
GO:GO:0023014	GO:GO:0038023	GO:GO:0042803	GO:GO:0050896	InterPro:HATPase_C	InterPro:HATPase_C_sf
InterPro:HisK_dim/P	InterPro:His_kinase_dom	InterPro:IPR000014	InterPro:IPR005467	InterPro:IPR016132	InterPro:IPR029016
InterPro:IPR036890	EnsemblPlants:KRG96653	ProteinID:KRG96653	ProteinID:KRG96653.1	ProteinID:KRG96654.1	InterPro:PAS
InterPro:PAS-like_dom_sf	InterPro:PAS_2	InterPro:PAS_fold	PFAM:PF00360	PFAM:PF00989	PFAM:PF01590
PFAM:PF02518	PFAM:PF08446	PIRSF:PIRSF000084	PRINTS:PR01033	PFscan:PS50046	PFscan:PS50109
PFscan:PS50112	PANTHER:PTHR43719	PANTHER:PTHR43719:SF13	InterPro:Phyto_chromo_attachment	InterPro:Phytochrome	InterPro:Phytochrome_A-E
InterPro:Phytochrome_cen-reg	SMART:SM00065	SMART:SM00091	SMART:SM00387	SMART:SM00388	SUPFAM:SSF55781
SUPFAM:SSF55785	SUPFAM:SSF55874	TIGRFAMs:TIGR00229	UniParc:UPI00019D1C47	SEG:seg	:

Description

hypothetical protein

Coordinates

chr19:+:47632647..47641546

Molecular Weight (calculated)

125460.0 Da

IEP (calculated)

6.319

GRAVY (calculated)

-0.112

Length

1130 amino acids

Sequence
(BLAST)

0001: MSSSRPSQSS SNNSGRSRTS RLSARRMAQT TLDAKLHATF EESGSSFDYS SSVRMSPAGT VSGDHQPRSD RATSSYLHQT QKIKLIQPFG CLLALDEKTC
0101: KVIAYSENAP EMLTMVSHAV PSVGDHPALG IGTDIRTIFT APSSAAIQKA LRFGDVSLHN PILVHCKTSG KPFYAIIHRV TGSVIIDFEP VKPHEVPMTA
0201: SGALQSYKLA AKAITRLESL TTGNMETLCN TMVREVFELT GYDRVMAYKF HEDDHGEVIA EVKRPGLEPY LGLHYPATDI PQATRFLFMK NKVRMIVDCC
0301: AKHVNVLQDK KIPFDLTLCG STLRAAHSCH LQYMENMNSS ASLVMAVVVN DNDEDGDSSD AVQPQKSKRL WGLVVCHHTT PRFVPFPLRY ACQFLAQVFA
0401: VHVSKELEIE YQIIEKNILQ TQTLLCDMLV QGEPLGIVSQ SPNIMDLVKC DGAALLYKNK VWRLGVTPSE SQIKEIALWL FECHEDSTGF CTDSLSDAGF
0501: PGAAALGDIA CGMAAARIAS KDILFWFRSH TASEIRWGGA KHEPGERDDG RRVHPRSSFK AFLEVVKTRS LPWKTYETDA IHSLQLILRD AFKETQSMEI
0601: STYAIDTRLG DLKIEGMQEL DAVTSEVVRL IETATVPILA VDVNGMINGW NTKIAELTGL PVDEAIGKHL LTLVEDFSVD RVKKMLDMAL QGEEERNVQF
0701: EIQTHHMKID SGPISLVVNA CASRDLQDNV VGVCFLAQDI TAQKTMMDKF TRIEGDYKAI VQNPNPLIPP IFGTDEFGWC CEWNSAMAKL TGWKREEVMD
0801: KMLLGEVFGT QIACCRLRNH EAVVNFSIVL NTAMAGLETE KVPFGFFARD GKHVECILSM TKKLDAEGVV TGVFCFLQLA SAELQQALHI QRISEQTSLK
0901: RLKDLTYLKR QIQNPLYGIM FSRKLLEGTE LGAEQKQFLQ TGIRCQRQIS KILDDSDLDS IIDGYMDLEM VEFTLHEVLV ASLSQVMTKS NAKGIRVVND
1001: VEEKITTETL YGDSIRLQQV LADFLLISIN FTPTGGQVVV AATLTQQQLG KLVHLANLEF SITHDSFGVP ETLLNQMFGR DGHESEEGIS MLISRKLLKL
1101: MNGDVRYLRE AGKSSFILSV ELAAAHKSNT

Best Arabidopsis Sequence Match ( AT1G09570.1 )
(BLAST)

0001: MSGSRPTQSS EGSRRSRHSA RIIAQTTVDA KLHADFEESG SSFDYSTSVR VTGPVVENQP PRSDKVTTTY LHHIQKGKLI QPFGCLLALD EKTFKVIAYS
0101: ENASELLTMA SHAVPSVGEH PVLGIGTDIR SLFTAPSASA LQKALGFGDV SLLNPILVHC RTSAKPFYAI IHRVTGSIII DFEPVKPYEV PMTAAGALQS
0201: YKLAAKAITR LQSLPSGSME RLCDTMVQEV FELTGYDRVM AYKFHEDDHG EVVSEVTKPG LEPYLGLHYP ATDIPQAARF LFMKNKVRMI VDCNAKHARV
0301: LQDEKLSFDL TLCGSTLRAP HSCHLQYMAN MDSIASLVMA VVVNEEDGEG DAPDATTQPQ KRKRLWGLVV CHNTTPRFVP FPLRYACEFL AQVFAIHVNK
0401: EVELDNQMVE KNILRTQTLL CDMLMRDAPL GIVSQSPNIM DLVKCDGAAL LYKDKIWKLG TTPSEFHLQE IASWLCEYHM DSTGLSTDSL HDAGFPRALS
0501: LGDSVCGMAA VRISSKDMIF WFRSHTAGEV RWGGAKHDPD DRDDARRMHP RSSFKAFLEV VKTRSLPWKD YEMDAIHSLQ LILRNAFKDS ETTDVNTKVI
0601: YSKLNDLKID GIQELEAVTS EMVRLIETAT VPILAVDSDG LVNGWNTKIA ELTGLSVDEA IGKHFLTLVE DSSVEIVKRM LENALEGTEE QNVQFEIKTH
0701: LSRADAGPIS LVVNACASRD LHENVVGVCF VAHDLTGQKT VMDKFTRIEG DYKAIIQNPN PLIPPIFGTD EFGWCTEWNP AMSKLTGLKR EEVIDKMLLG
0801: EVFGTQKSCC RLKNQEAFVN LGIVLNNAVT SQDPEKVSFA FFTRGGKYVE CLLCVSKKLD REGVVTGVFC FLQLASHELQ QALHVQRLAE RTAVKRLKAL
0901: AYIKRQIRNP LSGIMFTRKM IEGTELGPEQ RRILQTSALC QKQLSKILDD SDLESIIEGC LDLEMKEFTL NEVLTASTSQ VMMKSNGKSV RITNETGEEV
1001: MSDTLYGDSI RLQQVLADFM LMAVNFTPSG GQLTVSASLR KDQLGRSVHL ANLEIRLTHT GAGIPEFLLN QMFGTEEDVS EEGLSLMVSR KLVKLMNGDV
1101: QYLRQAGKSS FIITAELAAA NK

Arabidopsis Description

PHYAphytochrome A [Source:TAIR;Acc:AT1G09570]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.