Skip to main content
crop-pal logo
Potato
Search for another protein from :
Potato
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • plastid 4
  • cytosol 2
  • nucleus 2
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, mitochondrion, nucleus, plastid
BaCelLo:plastid
EpiLoc:plastid
iPSORT:plastid
MultiLoc:cytosol
Plant-mPloc:nucleus
PProwler:plastid
TargetP:mitochondrion
WoLF PSORT:nucleus
YLoc:cytosol
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Solyc10g044670.1.1 Tomato extracellular 96.88 96.88
VIT_14s0060g00100.t01 Wine grape nucleus 84.15 84.07
CDY22632 Canola cytosol, plastid 78.27 78.27
AT1G09570.3 Thale cress cytosol 78.45 78.24
CDY06362 Canola cytosol, plastid 77.92 78.06
Bra031672.1-P Field mustard cytosol, plastid 77.83 77.97
KRG90417 Soybean nucleus 77.47 77.47
CDY50896 Canola endoplasmic reticulum, plastid, vacuole 78.9 76.31
KRG96653 Soybean nucleus 74.53 74.07
CDX93501 Canola cytosol 79.16 73.96
Bra020013.1-P Field mustard cytosol 79.07 73.39
KRH33709 Soybean endoplasmic reticulum, golgi, plastid 75.96 71.62
GSMUA_Achr8P06130_001 Banana cytosol, mitochondrion 65.89 68.84
HORVU0Hr1G023250.4 Barley cytosol 20.75 66.95
HORVU1Hr1G068750.7 Barley cytosol 21.02 66.48
TraesCS4B01G052000.1 Wheat mitochondrion 51.56 65.42
KRH68382 Soybean endoplasmic reticulum, plastid, vacuole 56.19 64.78
GSMUA_Achr5P27310_001 Banana cytosol 8.9 64.52
OQU91090 Sorghum nucleus 64.11 63.66
Os03t0719800-01 Rice plastid 63.94 63.65
Zm00001d033799_P001 Maize cytosol 63.76 63.31
Zm00001d013402_P005 Maize nucleus 63.4 62.95
HORVU4Hr1G008610.2 Barley mitochondrion 62.96 62.57
TraesCS4A01G262900.1 Wheat mitochondrion 62.69 62.3
TraesCS4D01G052200.1 Wheat plastid 62.51 61.9
Zm00001d008542_P001 Maize cytosol 12.82 59.5
OQU91089 Sorghum cytosol 8.99 56.42
PGSC0003DMT400044822 Potato plastid 55.39 55.54
PGSC0003DMT400061712 Potato cytosol, plastid 53.7 53.36
PGSC0003DMT400069974 Potato mitochondrion 51.47 51.38
PGSC0003DMT400007944 Potato cytosol, plastid 48.44 47.89
Protein Annotations
Gene3D:1.10.287.130EntrezGene:102577627MapMan:26.1.1.1Gene3D:3.30.450.20Gene3D:3.30.450.270Gene3D:3.30.450.40
Gene3D:3.30.565.10ProteinID:AAB21533ProteinID:AAB21533.2ProteinID:ABA46868ProteinID:ABA46868.1ncoils:Coil
EMBL:DQ208423InterPro:GAFInterPro:GAF-like_dom_sfGO:GO:0000155GO:GO:0000160GO:GO:0003674
GO:GO:0003676GO:GO:0003723GO:GO:0003729GO:GO:0003824GO:GO:0004672GO:GO:0004871
GO:GO:0005488GO:GO:0005515GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005634
GO:GO:0005654GO:GO:0005737GO:GO:0006139GO:GO:0006351GO:GO:0006355GO:GO:0006412
GO:GO:0006464GO:GO:0006468GO:GO:0007154GO:GO:0007165GO:GO:0007275GO:GO:0008150
GO:GO:0008152GO:GO:0009058GO:GO:0009584GO:GO:0009585GO:GO:0009605GO:GO:0009606
GO:GO:0009628GO:GO:0009630GO:GO:0009638GO:GO:0009640GO:GO:0009791GO:GO:0009881
GO:GO:0009987GO:GO:0010018GO:GO:0010161GO:GO:0010201GO:GO:0010203GO:GO:0010218
GO:GO:0016301GO:GO:0016604GO:GO:0016740GO:GO:0017006GO:GO:0017148GO:GO:0018298
GO:GO:0019538GO:GO:0023014GO:GO:0031516GO:GO:0038023GO:GO:0042802GO:GO:0042803
GO:GO:0046685GO:GO:0050896InterPro:HATPase_CInterPro:HATPase_C_sfInterPro:HisK_dim/PInterPro:His_kinase_dom
InterPro:IPR000014InterPro:IPR000700InterPro:IPR005467InterPro:IPR016132InterPro:IPR029016InterPro:IPR036890
UniProt:M1BAD9InterPro:PASInterPro:PAS-assoc_CInterPro:PAS-like_dom_sfInterPro:PAS_2InterPro:PAS_fold
PFAM:PF00360PFAM:PF00512PFAM:PF00989PFAM:PF01590PFAM:PF02518PFAM:PF08446
EnsemblPlantsGene:PGSC0003DMG400015766PGSC:PGSC0003DMG400015766EnsemblPlants:PGSC0003DMT400040772PIRSF:PIRSF000084PRINTS:PR01033ScanProsite:PS00245
PFscan:PS50046PFscan:PS50109PFscan:PS50112PFscan:PS50113PANTHER:PTHR43719PANTHER:PTHR43719:SF13
InterPro:Phyto_chromo_BSInterPro:Phyto_chromo_attachmentInterPro:PhytochromeInterPro:Phytochrome_A-EInterPro:Phytochrome_cen-regEMBL:S84872
SMART:SM00065SMART:SM00091SMART:SM00387SMART:SM00388SUPFAM:SSF55781SUPFAM:SSF55785
SUPFAM:SSF55874TIGRFAMs:TIGR00229UniParc:UPI0002969A9ARefSeq:XP_006339917.1SEG:seg:
Description
Phytochrome A [Source:PGSC_GENE;Acc:PGSC0003DMG400015766]
Coordinates
chr10:+:18119135..18125850
Molecular Weight (calculated)
124679.0 Da
IEP (calculated)
6.225
GRAVY (calculated)
-0.147
Length
1123 amino acids
Sequence
(BLAST)
0001: MSSSRPSQSS TTSSRSKHSA RIIAQTSIDA KLHADFEESG DSFDYSSSVR VTNVAEGEQR PKSDKVTTAY LHQIQKGKFI QPFGCLLALD EKTLKVIAFS
0101: ENAPEMLTMV SHAVPSVGEH PVLGIGTDIR TIFTGPSGAA LQKALGFGEV SLLNPVLVHC KNSGKPFYAI VHRVTGSLII DFEPVKPYEV PMTAAGALQS
0201: YKLAAKAITR LQSLPSGSME RLCDTMVQEV FELTGYDRVM GYKFHDDDHG EVVSEITKPG LEPYLGLHYP ATDIPQAARF LFMKNKVRMI CDCRAKHVKV
0301: VQDEKLPFDL TLCGSTLRAP HYCHLQYMEN MNSIASLVMA VVVNDGDEEG ESSDSSQSQK RKRLWGLVVC HNTTPRFVPF PLRYACEFLA QVFAIHVNKE
0401: LELENQFLEK NILRTQTLLC DMLMRDAPLG IVSQSPNIMD LIKCDGAALL YKNKIHRLGM NPSDFQLHDI VSWLCEYHTD STGLSTDSLY DAGFPGALAL
0501: GDAVCGMAAV RISDKDWLFW YRSHTAAEVR WGGAKHEPGE KDDGRKMHPR SSFKAFLEVV KTRSIPWKDY EMDAIHSLQL ILRNAFKDAD AVNSNTISIH
0601: TKLNDLKIDG MQELEAVTAE MVRLIETASV PIFAVDVDGQ VNGWNTKVAE LTGLPVDEAI GKHLLTLVED SSVDTVNKML ELALQGKEER NVEFEIKTHG
0701: PSRDSSPISL IVNACASKDV RDSVVGVCFI AQDITGQKSI MDKFTRIEGD YRAIIQNPHP LIPPIFGTDQ FGWCSEWNSA MTKLTGWRRD DVMDKMLLGE
0801: VFGTQAACCR LKNQEAFVNF GVILNNAITG QESEKIPFGF FARYGKYVEC LLCVSKRLDK EGAVTGLFCF LQLASHELQQ ALHVQRLSEQ TALKRLKVLA
0901: YIRRQIRNPL SGIIFSRKML EGTSLGEEQK NILHTSAQCQ RQLDKILDDT DLDSIIEGYL DLEMLEFKLH EVLVASISQV MMKSNGKNIM ISNDMVEDLL
1001: NETLYGDSPR LQQVLANFLL VSVNSTPSGG KLSISGKLTK DRIGESVQLA LLEFRIRHTG GGVPEELLSQ MFGSEADASE EGISLLVSRK LVKLMNGEVQ
1101: YLREAGRSTF IISVELAVAT KSS
Best Arabidopsis Sequence Match ( AT1G09570.3 )
(BLAST)
0001: MEKKMSGSRP TQSSEGSRRS RHSARIIAQT TVDAKLHADF EESGSSFDYS TSVRVTGPVV ENQPPRSDKV TTTYLHHIQK GKLIQPFGCL LALDEKTFKV
0101: IAYSENASEL LTMASHAVPS VGEHPVLGIG TDIRSLFTAP SASALQKALG FGDVSLLNPI LVHCRTSAKP FYAIIHRVTG SIIIDFEPVK PYEVPMTAAG
0201: ALQSYKLAAK AITRLQSLPS GSMERLCDTM VQEVFELTGY DRVMAYKFHE DDHGEVVSEV TKPGLEPYLG LHYPATDIPQ AARFLFMKNK VRMIVDCNAK
0301: HARVLQDEKL SFDLTLCGST LRAPHSCHLQ YMANMDSIAS LVMAVVVNEE DGEGDAPDAT TQPQKRKRLW GLVVCHNTTP RFVPFPLRYA CEFLAQVFAI
0401: HVNKEVELDN QMVEKNILRT QTLLCDMLMR DAPLGIVSQS PNIMDLVKCD GAALLYKDKI WKLGTTPSEF HLQEIASWLC EYHMDSTGLS TDSLHDAGFP
0501: RALSLGDSVC GMAAVRISSK DMIFWFRSHT AGEVRWGGAK HDPDDRDDAR RMHPRSSFKA FLEVVKTRSL PWKDYEMDAI HSLQLILRNA FKDSETTDVN
0601: TKVIYSKLND LKIDGIQELE AVTSEMVRLI ETATVPILAV DSDGLVNGWN TKIAELTGLS VDEAIGKHFL TLVEDSSVEI VKRMLENALE GTEEQNVQFE
0701: IKTHLSRADA GPISLVVNAC ASRDLHENVV GVCFVAHDLT GQKTVMDKFT RIEGDYKAII QNPNPLIPPI FGTDEFGWCT EWNPAMSKLT GLKREEVIDK
0801: MLLGEVFGTQ KSCCRLKNQE AFVNLGIVLN NAVTSQDPEK VSFAFFTRGG KYVECLLCVS KKLDREGVVT GVFCFLQLAS HELQQALHVQ RLAERTAVKR
0901: LKALAYIKRQ IRNPLSGIMF TRKMIEGTEL GPEQRRILQT SALCQKQLSK ILDDSDLESI IEGCLDLEMK EFTLNEVLTA STSQVMMKSN GKSVRITNET
1001: GEEVMSDTLY GDSIRLQQVL ADFMLMAVNF TPSGGQLTVS ASLRKDQLGR SVHLANLEIR LTHTGAGIPE FLLNQMFGTE EDVSEEGLSL MVSRKLVKLM
1101: NGDVQYLRQA GKSSFIITAE LAAANK
Arabidopsis Description
PHYAphytochrome A [Source:TAIR;Acc:AT1G09570]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.