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Potato
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Potato
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • plastid 5
  • mitochondrion 1
  • cytosol 2
  • nucleus 1
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:cytosol, mitochondrion, nucleus, plastid
ChloroP:plastid
EpiLoc:plastid
iPSORT:mitochondrion
MultiLoc:cytosol
Plant-mPloc:nucleus
PProwler:plastid
TargetP:plastid
WoLF PSORT:plastid
YLoc:cytosol
PPI

Inferred distinct locusB in Crop

locusBlocations
PGSC0003DMT400044822
PGSC0003DMT400061712
PGSC0003DMT400069974

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT5G35840.1 PGSC0003DMT400061712 AT2G18790.1 15273290
AT5G35840.1 PGSC0003DMT400069974 AT2G18790.1 15273290
AT5G35840.1 PGSC0003DMT400061712 AT2G18790.1 19286967
AT5G35840.1 PGSC0003DMT400069974 AT2G18790.1 19286967
AT5G35840.1 PGSC0003DMT400061712 AT4G16250.1 19286967
AT5G35840.1 PGSC0003DMT400069974 AT4G16250.1 19286967
AT5G35840.1 PGSC0003DMT400044822 AT5G35840.1 15273290
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Solyc07g045480.2.1 Tomato plastid 94.64 94.81
VIT_12s0057g00980.t01 Wine grape cytosol, plastid 74.64 74.78
GSMUA_Achr6P00080_001 Banana mitochondrion 60.45 67.5
GSMUA_Achr4P32940_001 Banana cytosol 6.88 66.38
TraesCS5D01G401000.1 Wheat cytosol, plastid 65.54 64.44
EER93439 Sorghum plastid 65.09 64.23
HORVU5Hr1G095530.2 Barley plastid 65.36 63.82
Zm00001d034038_P002 Maize peroxisome 64.2 63.35
AT5G35840.1 Thale cress mitochondrion 62.41 62.92
TraesCS5A01G391300.2 Wheat cytosol, plastid 65.36 62.89
CDY06455 Canola cytosol, mitochondrion, nucleus, plastid 61.34 61.45
CDY38546 Canola cytosol, plastid 60.98 61.15
Bra039485.1-P Field mustard cytosol, plastid 60.89 61.06
TraesCS5B01G396200.1 Wheat plastid 62.05 60.33
Zm00001d018728_P001 Maize cytosol, mitochondrion 11.43 60.09
GSMUA_Achr4P32930_001 Banana cytosol 31.34 59.59
PGSC0003DMT400040772 Potato cytosol 55.54 55.39
PGSC0003DMT400061712 Potato cytosol, plastid 54.46 53.98
PGSC0003DMT400069974 Potato mitochondrion 53.57 53.33
Zm00001d013262_P001 Maize nucleus, plastid 64.02 52.3
Os03t0752100-01 Rice cytosol 10.45 51.09
Zm00001d006712_P001 Maize peroxisome 7.68 49.14
PGSC0003DMT400007944 Potato cytosol, plastid 49.02 48.33
Zm00001d050162_P001 Maize cytosol 5.45 44.2
Zm00001d012117_P001 Maize cytosol 5.54 42.47
Zm00001d022520_P001 Maize cytosol 5.54 42.47
Protein Annotations
Gene3D:1.10.287.130EntrezGene:102595581MapMan:26.1.1.1Gene3D:3.30.450.20Gene3D:3.30.450.270Gene3D:3.30.450.40
Gene3D:3.30.565.10InterPro:GAFInterPro:GAF-like_dom_sfGO:GO:0000155GO:GO:0000160GO:GO:0003674
GO:GO:0003824GO:GO:0004871GO:GO:0005488GO:GO:0005515GO:GO:0005575GO:GO:0005622
GO:GO:0005623GO:GO:0006139GO:GO:0006351GO:GO:0006355GO:GO:0006464GO:GO:0007154
GO:GO:0007165GO:GO:0008150GO:GO:0008152GO:GO:0009058GO:GO:0009584GO:GO:0009585
GO:GO:0009605GO:GO:0009628GO:GO:0009881GO:GO:0009987GO:GO:0016301GO:GO:0016740
GO:GO:0017006GO:GO:0018298GO:GO:0019538GO:GO:0023014GO:GO:0038023GO:GO:0042803
GO:GO:0050896InterPro:HATPase_CInterPro:HATPase_C_sfInterPro:HisK_dim/PInterPro:His_kinase_domInterPro:IPR000014
InterPro:IPR005467InterPro:IPR016132InterPro:IPR029016InterPro:IPR036890UniProt:M1BGQ7InterPro:PAS
InterPro:PAS-like_dom_sfInterPro:PAS_2InterPro:PAS_foldPFAM:PF00360PFAM:PF00989PFAM:PF01590
PFAM:PF02518PFAM:PF08446EnsemblPlantsGene:PGSC0003DMG400017396PGSC:PGSC0003DMG400017396EnsemblPlants:PGSC0003DMT400044822PIRSF:PIRSF000084
PRINTS:PR01033ScanProsite:PS00245PFscan:PS50046PFscan:PS50109PFscan:PS50112PANTHER:PTHR43719
PANTHER:PTHR43719:SF4InterPro:Phyto_chromo_BSInterPro:Phyto_chromo_attachmentInterPro:PhytochromeInterPro:Phytochrome_A-EInterPro:Phytochrome_cen-reg
SMART:SM00065SMART:SM00091SMART:SM00387SUPFAM:SSF55781SUPFAM:SSF55785SUPFAM:SSF55874
TIGRFAMs:TIGR00229UniParc:UPI000295DFE9RefSeq:XP_006357639.1SEG:seg::
Description
Phytochrome F [Source:PGSC_GENE;Acc:PGSC0003DMG400017396]
Coordinates
chr7:+:43586512..43597264
Molecular Weight (calculated)
124739.0 Da
IEP (calculated)
6.241
GRAVY (calculated)
-0.111
Length
1120 amino acids
Sequence
(BLAST)
0001: MSSSSTTNRT NCSRGSSARS RHGARVIAQT SVDAKLHVEF EESEQQFDYS SSVNLSNSTS NLPSSTVSNY LQKMQRGSLI QPFGCMIAID EHNFAVIAYS
0101: ENAPEMLDLT PHAVPSIEQQ EALTFGTDVR KLFRSSGASA LEKAASFGEL SLLNPILVHC KNSGKPFYAI LHRIDVGLVI ELEPVDPDEV PVTTAGAIKS
0201: YKLAAKAIGK LQSLPSGDIS LLCDVLVREV SHLTGYDRVM VYKFHEDEHG EVVAECRMPE LEPYLGLHYP ATDIPQASRF LFMKNKVRMI CDCLAPPIRV
0301: IQDPRLAQSL SLGGSTLRAP HGCHAQYMTN MGTVASMAMS VMISEQDDEL DSDQQVERKL WGLVVCHHSC PRFLSFPLRY ACEFLLQVFS VQINKEVEMA
0401: AQLKEKQILQ TQTVLCDMLL RDAPMGIVTQ SPNVMDLVKC DGAALYYRNK LWLHGVTPTE SQIRDIAEWL NESHGDSTGL NTDSLMEAGY PGASVLGNAV
0501: CGMAAIKITS KDFLFWFRSH TAKEIKWGGA KHLPGDKDDG RKMHPRSSFK AFLEVVKRRS LPWEDVEMDA IHSLQLILRG SLQDEAADCC KMIVNVPAVN
0601: TSIDRVDELH IVTNGMVRLI ETASLPILAV DASGRINGWN SKVSELTGLP VENAIGVPLV DLVIDGTTNT IKGVLSLALQ GKEEKNVEIK LRTLGPQEKV
0701: GSITIVANAC CSRDVRQNIV GVCFIGKDVT GLKLIKDKYS RIQGDYVGII RSPSPLIPPI FVMDEHGRCV EWNDAMHKFT GSKREEVIDQ MLLGEVFTVN
0801: SFGCRVKDQD TLTQLTILLN RVIAGGEGEK LFFGLFNKQG KYIEALISAN KRVDDNGRVT GVLCFLHVPS PELQYAMHVQ KLSEQAAKNS LKKLAYVRLE
0901: LKNPLNGINC IQNLLKSSDL SKDQRQLLKT STMCQEQLAK IIDDTDIESI EECYMEMNSC EFNLGEVVTV VINQVMILSQ ERKVQVTWDS PVEVSQLYLI
1001: GDNLRLQQVL SDFLTTAILF TPFEDSSVHF RVIPRKERIG TKMYVMHLEF RITHPSPGIP DELIQHMFHY SQSISREGLA LYISQKLVKI MDGTVQYLRE
1101: AERSSFIILV EFPLVEKNNN
Best Arabidopsis Sequence Match ( AT5G35840.1 )
(BLAST)
0001: MSSNTSRSCS TRSRQNSRVS SQVLVDAKLH GNFEESERLF DYSASINLNM PSSSCEIPSS AVSTYLQKIQ RGMLIQPFGC LIVVDEKNLK VIAFSENTQE
0101: MLGLIPHTVP SMEQREALTI GTDVKSLFLS PGCSALEKAV DFGEISILNP ITLHCRSSSK PFYAILHRIE EGLVIDLEPV SPDEVPVTAA GALRSYKLAA
0201: KSISRLQALP SGNMLLLCDA LVKEVSELTG YDRVMVYKFH EDGHGEVIAE CCREDMEPYL GLHYSATDIP QASRFLFMRN KVRMICDCSA VPVKVVQDKS
0301: LSQPISLSGS TLRAPHGCHA QYMSNMGSVA SLVMSVTING SDSDEMNRDL QTGRHLWGLV VCHHASPRFV PFPLRYACEF LTQVFGVQIN KEAESAVLLK
0401: EKRILQTQSV LCDMLFRNAP IGIVTQSPNI MDLVKCDGAA LYYRDNLWSL GVTPTETQIR DLIDWVLKSH GGNTGFTTES LMESGYPDAS VLGESICGMA
0501: AVYISEKDFL FWFRSSTAKQ IKWGGARHDP NDRDGKRMHP RSSFKAFMEI VRWKSVPWDD MEMDAINSLQ LIIKGSLQEE HSKTVVDVPL VDNRVQKVDE
0601: LCVIVNEMVR LIDTAAVPIF AVDASGVING WNSKAAEVTG LAVEQAIGKP VSDLVEDDSV ETVKNMLALA LEGSEERGAE IRIRAFGPKR KSSPVELVVN
0701: TCCSRDMTNN VLGVCFIGQD VTGQKTLTEN YSRVKGDYAR IMWSPSTLIP PIFITNENGV CSEWNNAMQK LSGIKREEVV NKILLGEVFT TDDYGCCLKD
0801: HDTLTKLRIG FNAVISGQKN IEKLLFGFYH RDGSFIEALL SANKRTDIEG KVTGVLCFLQ VPSPELQYAL QVQQISEHAI ACALNKLAYL RHEVKDPEKA
0901: ISFLQDLLHS SGLSEDQKRL LRTSVLCREQ LAKVISDSDI EGIEEGYVEL DCSEFGLQES LEAVVKQVME LSIERKVQIS CDYPQEVSSM RLYGDNLRLQ
1001: QILSETLLSS IRFTPALRGL CVSFKVIARI EAIGKRMKRV ELEFRIIHPA PGLPEDLVRE MFQPLRKGTS REGLGLHITQ KLVKLMERGT LRYLRESEMS
1101: AFVILTEFPL I
Arabidopsis Description
PHYCPhytochrome C [Source:UniProtKB/Swiss-Prot;Acc:P14714]
SUBAcon: [mitochondrion]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.