Factsheet for GSMUA_Achr4P32930_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plastid 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr3P08340_001
GSMUA_Achr4P32930_001
GSMUA_Achr4P32940_001
GSMUA_Achr6P00080_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G35840.1	GSMUA_Achr3P08340_001	AT2G18790.1	15273290
AT5G35840.1	GSMUA_Achr3P08340_001	AT2G18790.1	19286967
AT5G35840.1	GSMUA_Achr3P08340_001	AT4G16250.1	19286967
AT5G35840.1	GSMUA_Achr4P32930_001	AT5G35840.1	15273290
AT5G35840.1	GSMUA_Achr4P32940_001	AT5G35840.1	15273290
AT5G35840.1	GSMUA_Achr6P00080_001	AT5G35840.1	15273290

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os03t0752100-01	Rice	cytosol	20.71	53.28
Zm00001d006712_P001	Maize	peroxisome	14.77	49.71
GSMUA_Achr6P00080_001	Banana	mitochondrion	74.36	43.67
VIT_12s0057g00980.t01	Wine grape	cytosol, plastid	64.01	33.72
Zm00001d050162_P001	Maize	cytosol	7.81	33.33
Zm00001d022520_P001	Maize	cytosol	8.15	32.88
Zm00001d012117_P001	Maize	cytosol	8.15	32.88
EER93439	Sorghum	plastid	61.63	31.98
Zm00001d034038_P002	Maize	peroxisome	61.46	31.89
TraesCS5D01G401000.1	Wheat	cytosol, plastid	60.78	31.43
PGSC0003DMT400044822	Potato	plastid	59.59	31.34
Solyc07g045480.2.1	Tomato	plastid	58.23	30.68
HORVU5Hr1G095530.2	Barley	plastid	59.59	30.6
TraesCS5A01G391300.2	Wheat	cytosol, plastid	60.44	30.58
Zm00001d018728_P001	Maize	cytosol, mitochondrion	10.7	29.58
AT5G35840.1	Thale cress	mitochondrion	52.29	27.72
TraesCS5B01G396200.1	Wheat	plastid	53.65	27.43
CDY38546	Canola	cytosol, plastid	50.08	26.41
Bra039485.1-P	Field mustard	cytosol, plastid	50.08	26.41
CDY06455	Canola	cytosol, mitochondrion, nucleus, plastid	50.08	26.39
Zm00001d013262_P001	Maize	nucleus, plastid	60.61	26.04
GSMUA_Achr8P06130_001	Banana	cytosol, mitochondrion	47.2	25.86
GSMUA_Achr3P08340_001	Banana	nucleus	45.16	24.43
GSMUA_Achr5P27310_001	Banana	cytosol	0.0	0.0
GSMUA_Achr4P32940_001	Banana	cytosol	0.0	0.0

Protein Annotations

Gene3D:1.10.287.130	MapMan:26.1.1.1	Gene3D:3.30.450.270	Gene3D:3.30.565.10	GO:GO:0006139	GO:GO:0006355
GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009584	GO:GO:0009605
GO:GO:0009628	GO:GO:0009987	GO:GO:0018298	GO:GO:0019538	EnsemblPlantsGene:GSMUA_Achr4G32930_001	EnsemblPlants:GSMUA_Achr4P32930_001
EnsemblPlants:GSMUA_Achr4T32930_001	InterPro:HATPase_C	InterPro:HATPase_C_sf	InterPro:His_kinase_dom	InterPro:IPR000014	InterPro:IPR005467
InterPro:IPR036890	UniProt:M0SU55	InterPro:PAS	InterPro:PAS-like_dom_sf	InterPro:PAS_fold	PFAM:PF00360
PFAM:PF00989	PFAM:PF02518	PRINTS:PR01033	PFscan:PS50109	PFscan:PS50112	PANTHER:PTHR43719
PANTHER:PTHR43719:SF4	InterPro:Phytochrome	InterPro:Phytochrome_cen-reg	SMART:SM00387	SUPFAM:SSF55781	SUPFAM:SSF55785
SUPFAM:SSF55874	TIGRFAMs:TIGR00229	UniParc:UPI0002952534	:	:	:

Description

Phytochrome C [Source:GMGC_GENE;Acc:GSMUA_Achr4G32930_001]

Coordinates

chr4:-:29565273..29568323

Molecular Weight (calculated)

66055.1 Da

IEP (calculated)

5.380

GRAVY (calculated)

-0.064

Length

589 amino acids

Sequence
(BLAST)

001: MLLHDAPIGI FTQSPNVMDL VKSDGAALYF RNQVWLLGMT PTELQIRDIV TWLMEYHDGS TGLSTDSMTE AGYPGAAELG DAVCGMAAIK ITSRDFIFWF
101: RSHTTKETKW GNINGWNSKA EDLTGLPVQE AIGMPLIDLV EDDSVEVAKK VLQLALRGKG EKNIEIKLKS FSNQDSNSSI ILVVNSCYSH DMKDNIVGVC
201: FVGQDVTRQK LMMDKNTRIQ NDYVAVVRNP SKLIPPIFII NESGCCSEWN SAMEKVSGTK RRGAIDKMLV GELFCHHGFG YQVKDHDALT KLKIVLNDYV
301: EALISVNKRM NSEGKIAGTL CFLHVASPEL QHSLQVQKMS EQVATNSLRE LAYLRQEIRN SLNGITFMQD LMETTDLTDE QKQLLRRKAL CQEPLAKILD
401: GMDLESIEQC YMELDSVEFH LGETLDVVIN QVMTLSRERQ VVLLQDWSAE VSSMHLYGDN LRLQQILADF LSSALQFAPV SQGSILLQAV ARKELTVTGV
501: QIVHIEFRII DPAPGIPEAL VQEMFQHSQG ISRGGHGLYV SQKLVKIMNG TVQYVRETER SSFIIILLEF PLVKPHRLEN MITELLVCL

Best Arabidopsis Sequence Match ( AT5G35840.1 )
(BLAST)

0001: MSSNTSRSCS TRSRQNSRVS SQVLVDAKLH GNFEESERLF DYSASINLNM PSSSCEIPSS AVSTYLQKIQ RGMLIQPFGC LIVVDEKNLK VIAFSENTQE
0101: MLGLIPHTVP SMEQREALTI GTDVKSLFLS PGCSALEKAV DFGEISILNP ITLHCRSSSK PFYAILHRIE EGLVIDLEPV SPDEVPVTAA GALRSYKLAA
0201: KSISRLQALP SGNMLLLCDA LVKEVSELTG YDRVMVYKFH EDGHGEVIAE CCREDMEPYL GLHYSATDIP QASRFLFMRN KVRMICDCSA VPVKVVQDKS
0301: LSQPISLSGS TLRAPHGCHA QYMSNMGSVA SLVMSVTING SDSDEMNRDL QTGRHLWGLV VCHHASPRFV PFPLRYACEF LTQVFGVQIN KEAESAVLLK
0401: EKRILQTQSV LCDMLFRNAP IGIVTQSPNI MDLVKCDGAA LYYRDNLWSL GVTPTETQIR DLIDWVLKSH GGNTGFTTES LMESGYPDAS VLGESICGMA
0501: AVYISEKDFL FWFRSSTAKQ IKWGGARHDP NDRDGKRMHP RSSFKAFMEI VRWKSVPWDD MEMDAINSLQ LIIKGSLQEE HSKTVVDVPL VDNRVQKVDE
0601: LCVIVNEMVR LIDTAAVPIF AVDASGVING WNSKAAEVTG LAVEQAIGKP VSDLVEDDSV ETVKNMLALA LEGSEERGAE IRIRAFGPKR KSSPVELVVN
0701: TCCSRDMTNN VLGVCFIGQD VTGQKTLTEN YSRVKGDYAR IMWSPSTLIP PIFITNENGV CSEWNNAMQK LSGIKREEVV NKILLGEVFT TDDYGCCLKD
0801: HDTLTKLRIG FNAVISGQKN IEKLLFGFYH RDGSFIEALL SANKRTDIEG KVTGVLCFLQ VPSPELQYAL QVQQISEHAI ACALNKLAYL RHEVKDPEKA
0901: ISFLQDLLHS SGLSEDQKRL LRTSVLCREQ LAKVISDSDI EGIEEGYVEL DCSEFGLQES LEAVVKQVME LSIERKVQIS CDYPQEVSSM RLYGDNLRLQ
1001: QILSETLLSS IRFTPALRGL CVSFKVIARI EAIGKRMKRV ELEFRIIHPA PGLPEDLVRE MFQPLRKGTS REGLGLHITQ KLVKLMERGT LRYLRESEMS
1101: AFVILTEFPL I

Arabidopsis Description

PHYCPhytochrome C [Source:UniProtKB/Swiss-Prot;Acc:P14714]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.