CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, plastid

Predictor Summary:

plastid 4
mitochondrion 1
cytosol 2
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX75900
CDX82382
CDX92112
CDX95888
CDY06455
CDY38546

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G35840.1	CDX75900	AT2G18790.1	15273290
AT5G35840.1	CDX82382	AT2G18790.1	15273290
AT5G35840.1	CDX92112	AT2G18790.1	15273290
AT5G35840.1	CDX95888	AT2G18790.1	15273290
AT5G35840.1	CDX75900	AT2G18790.1	19286967
AT5G35840.1	CDX82382	AT2G18790.1	19286967
AT5G35840.1	CDX92112	AT2G18790.1	19286967
AT5G35840.1	CDX95888	AT2G18790.1	19286967
AT5G35840.1	CDY06455	AT5G35840.1	15273290
AT5G35840.1	CDY38546	AT5G35840.1	15273290

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra039485.1-P	Field mustard	cytosol, plastid	99.19	99.19
CDY06455	Canola	cytosol, mitochondrion, nucleus, plastid	97.31	97.23
AT5G35840.1	Thale cress	mitochondrion	87.02	87.49
GSMUA_Achr4P32940_001	Banana	cytosol	7.16	68.97
VIT_12s0057g00980.t01	Wine grape	cytosol, plastid	63.83	63.77
PGSC0003DMT400044822	Potato	plastid	61.15	60.98
Solyc07g045480.2.1	Tomato	plastid	60.43	60.38
GSMUA_Achr6P00080_001	Banana	mitochondrion	51.92	57.83
Zm00001d034038_P002	Maize	peroxisome	57.92	57.0
EER93439	Sorghum	plastid	57.83	56.92
TraesCS5D01G401000.1	Wheat	cytosol, plastid	57.56	56.45
HORVU5Hr1G095530.2	Barley	plastid	57.39	55.88
TraesCS5A01G391300.2	Wheat	cytosol, plastid	57.21	54.9
TraesCS5B01G396200.1	Wheat	plastid	54.52	52.86
CDY06362	Canola	cytosol, plastid	51.21	51.03
CDY22632	Canola	cytosol, plastid	50.94	50.67
GSMUA_Achr4P32930_001	Banana	cytosol	26.41	50.08
CDX92112	Canola	cytosol	50.58	49.82
CDY50896	Canola	endoplasmic reticulum, plastid, vacuole	51.57	49.61
CDX95888	Canola	cytosol	50.58	48.37
CDX93501	Canola	cytosol	51.57	47.92
CDX75900	Canola	cytosol	49.42	47.79
Zm00001d018728_P001	Maize	cytosol, mitochondrion	9.04	47.42
Zm00001d013262_P001	Maize	nucleus, plastid	57.21	46.61
CDY61670	Canola	cytosol	44.49	44.53
CDX78827	Canola	cytosol	42.7	44.17
Os03t0752100-01	Rice	cytosol	8.95	43.67
Zm00001d006712_P001	Maize	peroxisome	6.62	42.29
Zm00001d050162_P001	Maize	cytosol	5.01	40.58
Zm00001d012117_P001	Maize	cytosol	5.19	39.73
Zm00001d022520_P001	Maize	cytosol	5.19	39.73
CDX82382	Canola	cytosol	6.18	37.5
CDY42549	Canola	cytosol	5.82	28.76

Protein Annotations

MapMan:26.1.1.1	Gene3D:3.30.450.20	Gene3D:3.30.450.270	Gene3D:3.30.450.40	Gene3D:3.30.565.10	GO:A0A078HLT5
UniProt:A0A078HLT5	EnsemblPlants:CDY38546	ProteinID:CDY38546	ProteinID:CDY38546.1	InterPro:GAF	InterPro:GAF-like_dom_sf
GO:GO:0003674	GO:GO:0004871	GO:GO:0005488	GO:GO:0005515	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0006464	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009584	GO:GO:0009585	GO:GO:0009605	GO:GO:0009628	GO:GO:0009881
GO:GO:0009987	GO:GO:0017006	GO:GO:0018298	GO:GO:0019538	GO:GO:0038023	GO:GO:0042803
GO:GO:0050896	EnsemblPlantsGene:GSBRNA2T00066206001	InterPro:HATPase_C	InterPro:HATPase_C_sf	InterPro:His_kinase_dom	InterPro:IPR000014
InterPro:IPR005467	InterPro:IPR016132	InterPro:IPR029016	InterPro:IPR036890	InterPro:PAS	InterPro:PAS-like_dom_sf
InterPro:PAS_2	InterPro:PAS_fold	PFAM:PF00360	PFAM:PF00989	PFAM:PF01590	PFAM:PF02518
PFAM:PF08446	PIRSF:PIRSF000084	PRINTS:PR01033	ScanProsite:PS00245	PFscan:PS50046	PFscan:PS50109
PFscan:PS50112	PANTHER:PTHR43719	PANTHER:PTHR43719:SF4	InterPro:Phyto_chromo_BS	InterPro:Phyto_chromo_attachment	InterPro:Phytochrome
InterPro:Phytochrome_A-E	InterPro:Phytochrome_cen-reg	SMART:SM00065	SMART:SM00091	SMART:SM00387	SUPFAM:SSF55781
SUPFAM:SSF55785	SUPFAM:SSF55874	TIGRFAMs:TIGR00229	UniParc:UPI0004EDE5DE	SEG:seg	:

Description

BnaA05g12750DPhytochrome [Source:UniProtKB/TrEMBL;Acc:A0A078HLT5]

Coordinates

chrLK032426:+:10948..14696

Molecular Weight (calculated)

123679.0 Da

IEP (calculated)

5.906

GRAVY (calculated)

-0.102

Length

1117 amino acids

Sequence
(BLAST)

0001: MSSGSSNSGS CSTRSRNNSR LSSQVLADAK LHGSFEESER LFDYSASIHV NMPTSSSYDI PSSSDVSSYL HKIQRGMLIQ PFGCLIVVDD KTLKVIAFSE
0101: NTQEMLGLSP HTVPSMEQRE ALSIGTDVQS LFQSQGSSAL QKAADFGEIS ILNPITLHCR TSGKPFYAIL HRIEQGLVID LEPVGLDEVP VTAAGALKSY
0201: KLAAKSISRL QALPSGNMSL LCDALVKEVS ELTGYDRVMV YKFHGDGHGE VIAECCKADL EPYLGLHYSA TDIPQASRFL FMRNKVRMIC DCSAVPVKVV
0301: QDKSLSQPIT LAGSTLRAPH GCHAQYMSNM GSVASLVMSV TINGSESDEM NRDLQTGRTL WGLVVCHHAS PRVVPFPLRY ACEFLTQVFG VQINKEAESA
0401: LLLKEKRILQ TQSVLCDMLF RNAPMGIVTQ SPNIMDLVKC DGAALYYRDK LWALGVAPTE TQIRDIIDWV LKSQGGGNSG FTTESLMESG YPDASVLGES
0501: ICGMAAVHIT QKVFLFWFRS GTAKQIKWGG ARHDPDDRDG KRMHPRSSFK AFMEIVRWKS MPWDDMEMDA INSLQLIIKG SLQEEHPETV VNVPPFVDNR
0601: VQKVDEMCVI VNEMVRLIDT AAVPIFAADA SGVINGWNSK AAEVTGLAVE QAIGKPVSDI VEDDSAITVK NMLALALQGH EERGAEIRIR AFGPKRKSSP
0701: IELVVNTCCS RDTRNNVLGV CFIGQDVTGQ KTLIEKYSRV QGDYARIMWS PSTLIPPIFM TTENGLCSEW NDAMQKLSGI RREEAVNKML LGEVFTSNDS
0801: CCRLQDHDTL TKLRIALNAV SSGQDNIEKL LFGFYHRDGR FIEALLSANK RTDMEGKVTG VLCFLQVPSP ELQYALQVQQ ISEQAMACAV NKMAYLRQQV
0901: ENPEKAISFL QDFLHSSGLN EEQKQLLSTS VSCREQLAKV ISDSDIEGIE DGYVQLGCSE FSLEESLEAV VKQVMELSIE RKVQIICDYP QEVSLMRLYG
1001: DSLRLQQILS ETLSSSIRFT PALKGLCVSF KVMSRIEAIG KRMKIVELEF RIIHPAPGLP DDLVREMFQP LRKDTSREGL GLHITQKMVK LMEGGTLRYL
1101: RESEMSAFVI LAEFPLL

Best Arabidopsis Sequence Match ( AT5G35840.1 )
(BLAST)

0001: MSSNTSRSCS TRSRQNSRVS SQVLVDAKLH GNFEESERLF DYSASINLNM PSSSCEIPSS AVSTYLQKIQ RGMLIQPFGC LIVVDEKNLK VIAFSENTQE
0101: MLGLIPHTVP SMEQREALTI GTDVKSLFLS PGCSALEKAV DFGEISILNP ITLHCRSSSK PFYAILHRIE EGLVIDLEPV SPDEVPVTAA GALRSYKLAA
0201: KSISRLQALP SGNMLLLCDA LVKEVSELTG YDRVMVYKFH EDGHGEVIAE CCREDMEPYL GLHYSATDIP QASRFLFMRN KVRMICDCSA VPVKVVQDKS
0301: LSQPISLSGS TLRAPHGCHA QYMSNMGSVA SLVMSVTING SDSDEMNRDL QTGRHLWGLV VCHHASPRFV PFPLRYACEF LTQVFGVQIN KEAESAVLLK
0401: EKRILQTQSV LCDMLFRNAP IGIVTQSPNI MDLVKCDGAA LYYRDNLWSL GVTPTETQIR DLIDWVLKSH GGNTGFTTES LMESGYPDAS VLGESICGMA
0501: AVYISEKDFL FWFRSSTAKQ IKWGGARHDP NDRDGKRMHP RSSFKAFMEI VRWKSVPWDD MEMDAINSLQ LIIKGSLQEE HSKTVVDVPL VDNRVQKVDE
0601: LCVIVNEMVR LIDTAAVPIF AVDASGVING WNSKAAEVTG LAVEQAIGKP VSDLVEDDSV ETVKNMLALA LEGSEERGAE IRIRAFGPKR KSSPVELVVN
0701: TCCSRDMTNN VLGVCFIGQD VTGQKTLTEN YSRVKGDYAR IMWSPSTLIP PIFITNENGV CSEWNNAMQK LSGIKREEVV NKILLGEVFT TDDYGCCLKD
0801: HDTLTKLRIG FNAVISGQKN IEKLLFGFYH RDGSFIEALL SANKRTDIEG KVTGVLCFLQ VPSPELQYAL QVQQISEHAI ACALNKLAYL RHEVKDPEKA
0901: ISFLQDLLHS SGLSEDQKRL LRTSVLCREQ LAKVISDSDI EGIEEGYVEL DCSEFGLQES LEAVVKQVME LSIERKVQIS CDYPQEVSSM RLYGDNLRLQ
1001: QILSETLLSS IRFTPALRGL CVSFKVIARI EAIGKRMKRV ELEFRIIHPA PGLPEDLVRE MFQPLRKGTS REGLGLHITQ KLVKLMERGT LRYLRESEMS
1101: AFVILTEFPL I

Arabidopsis Description

PHYCPhytochrome C [Source:UniProtKB/Swiss-Prot;Acc:P14714]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.