Factsheet for Zm00001d034038_P002

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome

Predictor Summary:

plastid 1
mitochondrion 3
peroxisome 2
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d000219_P001
Zm00001d006712_P001
Zm00001d012117_P001
Zm00001d013262_P001
Zm00001d018728_P001
Zm00001d022520_P001
Zm00001d024238_P001
Zm00001d025231_P001
Zm00001d028905_P001
Zm00001d034038_P002
Zm00001d047632_P001
Zm00001d050162_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G35840.1	Zm00001d000219_P001	AT2G18790.1	15273290
AT5G35840.1	Zm00001d024238_P001	AT2G18790.1	15273290
AT5G35840.1	Zm00001d025231_P001	AT2G18790.1	15273290
AT5G35840.1	Zm00001d028905_P001	AT2G18790.1	15273290
AT5G35840.1	Zm00001d047632_P001	AT2G18790.1	15273290
AT5G35840.1	Zm00001d000219_P001	AT2G18790.1	19286967
AT5G35840.1	Zm00001d024238_P001	AT2G18790.1	19286967
AT5G35840.1	Zm00001d025231_P001	AT2G18790.1	19286967
AT5G35840.1	Zm00001d028905_P001	AT2G18790.1	19286967
AT5G35840.1	Zm00001d047632_P001	AT2G18790.1	19286967
AT5G35840.1	Zm00001d000219_P001	AT4G16250.1	19286967
AT5G35840.1	Zm00001d024238_P001	AT4G16250.1	19286967
AT5G35840.1	Zm00001d025231_P001	AT4G16250.1	19286967
AT5G35840.1	Zm00001d028905_P001	AT4G16250.1	19286967
AT5G35840.1	Zm00001d047632_P001	AT4G16250.1	19286967
AT5G35840.1	Zm00001d006712_P001	AT5G35840.1	15273290
AT5G35840.1	Zm00001d012117_P001	AT5G35840.1	15273290
AT5G35840.1	Zm00001d013262_P001	AT5G35840.1	15273290
AT5G35840.1	Zm00001d018728_P001	AT5G35840.1	15273290
AT5G35840.1	Zm00001d022520_P001	AT5G35840.1	15273290
AT5G35840.1	Zm00001d034038_P002	AT5G35840.1	15273290
AT5G35840.1	Zm00001d050162_P001	AT5G35840.1	15273290

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER93439	Sorghum	plastid	92.86	92.86
Zm00001d018728_P001	Maize	cytosol, mitochondrion	16.56	88.26
Zm00001d006712_P001	Maize	peroxisome	13.48	87.43
TraesCS5D01G401000.1	Wheat	cytosol, plastid	86.26	85.95
HORVU5Hr1G095530.2	Barley	plastid	85.73	84.83
TraesCS5A01G391300.2	Wheat	cytosol, plastid	86.08	83.93
TraesCS5B01G396200.1	Wheat	plastid	81.06	79.86
Os03t0752100-01	Rice	cytosol	15.95	79.04
Zm00001d013262_P001	Maize	nucleus, plastid	92.51	76.59
GSMUA_Achr4P32940_001	Banana	cytosol	7.75	75.86
Zm00001d050162_P001	Maize	cytosol	8.9	73.19
Zm00001d022520_P001	Maize	cytosol	9.16	71.23
Zm00001d012117_P001	Maize	cytosol	9.16	71.23
GSMUA_Achr6P00080_001	Banana	mitochondrion	62.29	70.49
VIT_12s0057g00980.t01	Wine grape	cytosol, plastid	68.9	69.95
PGSC0003DMT400044822	Potato	plastid	63.35	64.2
Solyc07g045480.2.1	Tomato	plastid	62.82	63.77
GSMUA_Achr4P32930_001	Banana	cytosol	31.89	61.46
AT5G35840.1	Thale cress	mitochondrion	57.27	58.51
CDY06455	Canola	cytosol, mitochondrion, nucleus, plastid	57.18	58.05
CDY38546	Canola	cytosol, plastid	57.0	57.92
Bra039485.1-P	Field mustard	cytosol, plastid	56.92	57.83
Zm00001d033799_P001	Maize	cytosol	51.28	51.46
Zm00001d028905_P001	Maize	extracellular	52.33	51.16
Zm00001d013402_P005	Maize	nucleus	50.84	51.02
Zm00001d047632_P001	Maize	plastid	51.72	50.34
Zm00001d008542_P001	Maize	cytosol	10.4	48.76
Zm00001d025231_P001	Maize	cytosol	4.32	30.62
Zm00001d000219_P001	Maize	cytosol	2.73	27.93
Zm00001d024238_P001	Maize	cytosol	9.52	24.55

Protein Annotations

Gene3D:1.10.287.130	EntrezGene:103644014	MapMan:26.1.1.1	Gene3D:3.30.450.20	Gene3D:3.30.450.270	Gene3D:3.30.450.40
Gene3D:3.30.565.10	ProteinID:AAP06790.1	InterPro:GAF	InterPro:GAF-like_dom_sf	GO:GO:0000155	GO:GO:0000160
GO:GO:0003674	GO:GO:0003824	GO:GO:0004871	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0006464
GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009584
GO:GO:0009585	GO:GO:0009605	GO:GO:0009628	GO:GO:0009881	GO:GO:0009987	GO:GO:0016301
GO:GO:0016740	GO:GO:0017006	GO:GO:0018298	GO:GO:0019538	GO:GO:0023014	GO:GO:0038023
GO:GO:0042803	GO:GO:0050896	InterPro:HATPase_C	InterPro:HATPase_C_sf	InterPro:HisK_dim/P	InterPro:His_kinase_dom
InterPro:IPR000014	InterPro:IPR005467	InterPro:IPR016132	InterPro:IPR029016	InterPro:IPR036890	ProteinID:ONM09378.1
ProteinID:ONM09381.1	InterPro:PAS	InterPro:PAS-like_dom_sf	InterPro:PAS_2	InterPro:PAS_fold	PFAM:PF00360
PFAM:PF00512	PFAM:PF00989	PFAM:PF01590	PFAM:PF02518	PFAM:PF08446	PIRSF:PIRSF000084
PRINTS:PR01033	PFscan:PS50046	PFscan:PS50109	PFscan:PS50112	PANTHER:PTHR43719	PANTHER:PTHR43719:SF4
InterPro:Phyto_chromo_attachment	InterPro:Phytochrome	InterPro:Phytochrome_A-E	InterPro:Phytochrome_cen-reg	UniProt:Q6XFQ1	SMART:SM00065
SMART:SM00091	SMART:SM00387	SMART:SM00388	SUPFAM:SSF55781	SUPFAM:SSF55785	SUPFAM:SSF55874
TIGRFAMs:TIGR00229	UniParc:UPI00003504C2	EnsemblPlantsGene:Zm00001d034038	EnsemblPlants:Zm00001d034038_P002	EnsemblPlants:Zm00001d034038_T002	SEG:seg

Description

phytochromeC1Phytochrome

Coordinates

chr1:-:281978994..281984348

Molecular Weight (calculated)

126147.0 Da

IEP (calculated)

6.241

GRAVY (calculated)

-0.147

Length

1135 amino acids

Sequence
(BLAST)

0001: MSLPSNNRRT CSRSSSARSK HSARVVAQTP VDAQLHAEFE GSQRHFDYSS SVGAANRPSA STSTVSTYLQ NMQRGRYIQP FGCLLAVHPD TFALLAYSEN
0101: APEMLDLTPH AVPTIDQRDA LGIGVDVRTL FRSQSSVALH KAAAFGEVNL LNPILVHART SGKPFYAILH RIDVGLVIDL EPVNPADVPV TAAGALKSYK
0201: LAAKAISRLQ SLPSGNLSLL CDVLVREVSE LTGYDRVMAY KFYEDEHGEV ISECRRSDLE PYLGLHYPAT DIPQASRFLF MKNKVRMICD CCATPVKVIQ
0301: DDSLAQPLSL CGSTLRASHG CHAQYMANMG SVASLAMSVT INEDEEEDGD TGSDQQPKGR KLWGLVVCHH TSPRFVPFPL RYACEFLLQV FGIQLNKEVE
0401: LAAQAKERHI LRTQTLLCDM LLRDAPVGIF TRSPNVMDLV KCDGAALYYQ NQLLVLGSTP SESEIKSIAT WLQDNHDGST GLSTDSLVEA GYPGAVALRE
0501: VVCGMAAIKI SSKDFIFWFR SHTTKEIKWG GAKHEPVDAD DDGRRMHPRS SFKAFLEVVK WRSVPWEDVE MDAIHSLQLI LRGSLPDEDA NRNNVRSIVK
0601: APSDDMKKIQ GLLELRTVTN EMVRLIETAT APVLAVDIAG NINGWNNKAA ELTGLPVMEA IGRPLIDLVV TDSIEVVKQI LDSALQGIEE QNMEIKLKTF
0701: HEHECNGPVI LKVNSCCSRD LSEKVIGVCF VAQDLTRQKM IMDKYTRIQG DYVAIVKNPT ELIPPIFMIN DLGSCLEWNK AMQKITGIKR EDAINKLLIG
0801: EVFTLHDYGC RVKDHATLTK LSILMNAVIS GQDPEKLFFG FFDTDGKYIE SLLTVNKRTD AEGKITGALC FLHVASPELQ HALQVQKMSE QAATNSFKEL
0901: TYIRQELRNP LNGMQFTCNL LKPSELTEEQ RQLLSSNVLC QDQLKKILHD TDLESIEQCY MEMNTVEFNL EQALNTVLMQ GIPLGKEKQI SIERNWPVEV
1001: SCMYLYGDNL RLQQILADYL ACALQFTQTA EGPIVLQVMS KKENIGSGMQ IAHLEFRIVH PAPGVPEALI QEMFQHNPGV SREGLGLYIS QKLVKTMSGT
1101: VQYLREADTS SFIILMEFPV AQLSSKRSKP STSKF

Best Arabidopsis Sequence Match ( AT5G35840.1 )
(BLAST)

0001: MSSNTSRSCS TRSRQNSRVS SQVLVDAKLH GNFEESERLF DYSASINLNM PSSSCEIPSS AVSTYLQKIQ RGMLIQPFGC LIVVDEKNLK VIAFSENTQE
0101: MLGLIPHTVP SMEQREALTI GTDVKSLFLS PGCSALEKAV DFGEISILNP ITLHCRSSSK PFYAILHRIE EGLVIDLEPV SPDEVPVTAA GALRSYKLAA
0201: KSISRLQALP SGNMLLLCDA LVKEVSELTG YDRVMVYKFH EDGHGEVIAE CCREDMEPYL GLHYSATDIP QASRFLFMRN KVRMICDCSA VPVKVVQDKS
0301: LSQPISLSGS TLRAPHGCHA QYMSNMGSVA SLVMSVTING SDSDEMNRDL QTGRHLWGLV VCHHASPRFV PFPLRYACEF LTQVFGVQIN KEAESAVLLK
0401: EKRILQTQSV LCDMLFRNAP IGIVTQSPNI MDLVKCDGAA LYYRDNLWSL GVTPTETQIR DLIDWVLKSH GGNTGFTTES LMESGYPDAS VLGESICGMA
0501: AVYISEKDFL FWFRSSTAKQ IKWGGARHDP NDRDGKRMHP RSSFKAFMEI VRWKSVPWDD MEMDAINSLQ LIIKGSLQEE HSKTVVDVPL VDNRVQKVDE
0601: LCVIVNEMVR LIDTAAVPIF AVDASGVING WNSKAAEVTG LAVEQAIGKP VSDLVEDDSV ETVKNMLALA LEGSEERGAE IRIRAFGPKR KSSPVELVVN
0701: TCCSRDMTNN VLGVCFIGQD VTGQKTLTEN YSRVKGDYAR IMWSPSTLIP PIFITNENGV CSEWNNAMQK LSGIKREEVV NKILLGEVFT TDDYGCCLKD
0801: HDTLTKLRIG FNAVISGQKN IEKLLFGFYH RDGSFIEALL SANKRTDIEG KVTGVLCFLQ VPSPELQYAL QVQQISEHAI ACALNKLAYL RHEVKDPEKA
0901: ISFLQDLLHS SGLSEDQKRL LRTSVLCREQ LAKVISDSDI EGIEEGYVEL DCSEFGLQES LEAVVKQVME LSIERKVQIS CDYPQEVSSM RLYGDNLRLQ
1001: QILSETLLSS IRFTPALRGL CVSFKVIARI EAIGKRMKRV ELEFRIIHPA PGLPEDLVRE MFQPLRKGTS REGLGLHITQ KLVKLMERGT LRYLRESEMS
1101: AFVILTEFPL I

Arabidopsis Description

PHYCPhytochrome C [Source:UniProtKB/Swiss-Prot;Acc:P14714]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.