Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- plastid 5
- mitochondrion 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| extracellular:
20408568
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d047632_P001 | Maize | plastid | 92.59 | 92.2 |
| Os03t0309200-01 | Rice | nucleus, plasma membrane | 87.08 | 90.27 |
| Zm00001d025231_P001 | Maize | cytosol | 12.32 | 89.38 |
| HORVU4Hr1G053400.1 | Barley | plasma membrane | 89.49 | 88.96 |
| TraesCS4D01G183400.1 | Wheat | plastid | 89.15 | 88.92 |
| TraesCS4B01G182400.1 | Wheat | plastid | 89.15 | 88.77 |
| TraesCS4A01G122500.2 | Wheat | plastid | 89.15 | 88.77 |
| Zm00001d000219_P001 | Maize | cytosol | 7.67 | 80.18 |
| VIT_05s0077g00940.t01 | Wine grape | cytosol | 75.28 | 77.41 |
| PGSC0003DMT400061712 | Potato | cytosol, plastid | 73.21 | 75.22 |
| KRH11936 | Soybean | nucleus | 73.04 | 73.8 |
| Solyc01g059870.2.1 | Tomato | cytosol | 71.83 | 73.74 |
| KRH36969 | Soybean | nucleus | 72.01 | 73.53 |
| GSMUA_Achr3P08340_001 | Banana | nucleus | 68.56 | 73.09 |
| CDX92112 | Canola | cytosol | 71.32 | 73.02 |
| AT2G18790.1 | Thale cress | nucleus | 71.92 | 71.25 |
| CDX95888 | Canola | cytosol | 71.4 | 70.98 |
| CDX75900 | Canola | cytosol | 70.37 | 70.74 |
| PGSC0003DMT400069974 | Potato | mitochondrion | 68.04 | 70.22 |
| Solyc05g053410.2.1 | Tomato | nucleus, plastid | 67.7 | 70.12 |
| Bra022192.1-P | Field mustard | cytosol | 71.92 | 70.05 |
| AT4G16250.1 | Thale cress | plastid | 68.48 | 68.3 |
| Bra001650.1-P | Field mustard | cytosol | 8.01 | 60.78 |
| CDX82382 | Canola | cytosol | 9.22 | 58.15 |
| Zm00001d018728_P001 | Maize | cytosol, mitochondrion | 9.65 | 52.58 |
| Zm00001d034038_P002 | Maize | peroxisome | 51.16 | 52.33 |
| Zm00001d013402_P005 | Maize | nucleus | 47.03 | 48.28 |
| Zm00001d033799_P001 | Maize | cytosol | 47.03 | 48.28 |
| Zm00001d024238_P001 | Maize | cytosol | 17.66 | 46.59 |
| Zm00001d012117_P001 | Maize | cytosol | 5.43 | 43.15 |
| Zm00001d022520_P001 | Maize | cytosol | 5.43 | 43.15 |
| Zm00001d013262_P001 | Maize | nucleus, plastid | 50.65 | 42.89 |
| Zm00001d050162_P001 | Maize | cytosol | 5.08 | 42.75 |
| Zm00001d008542_P001 | Maize | cytosol | 8.53 | 40.91 |
| CDY42549 | Canola | cytosol | 7.92 | 40.71 |
| Zm00001d006712_P001 | Maize | peroxisome | 4.48 | 29.71 |
Protein Annotations
| Gene3D:1.10.287.130 | EntrezGene:100383702 | MapMan:26.1.1.1 | MapMan:26.4.1.2 | Gene3D:3.30.450.20 | Gene3D:3.30.450.270 |
| Gene3D:3.30.450.40 | Gene3D:3.30.565.10 | ProteinID:AAP06788.1 | ncoils:Coil | InterPro:GAF | InterPro:GAF-like_dom_sf |
| GO:GO:0000155 | GO:GO:0000160 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004871 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0006139 | GO:GO:0006351 |
| GO:GO:0006355 | GO:GO:0006464 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009584 | GO:GO:0009585 | GO:GO:0009605 | GO:GO:0009628 | GO:GO:0009881 |
| GO:GO:0009987 | GO:GO:0016301 | GO:GO:0016740 | GO:GO:0017006 | GO:GO:0018298 | GO:GO:0019538 |
| GO:GO:0023014 | GO:GO:0038023 | GO:GO:0042803 | GO:GO:0050896 | InterPro:HATPase_C | InterPro:HATPase_C_sf |
| InterPro:HisK_dim/P | InterPro:HisK_dim/P_sf | InterPro:His_kinase_dom | InterPro:IPR000014 | InterPro:IPR005467 | InterPro:IPR016132 |
| InterPro:IPR029016 | InterPro:IPR036890 | ProteinID:ONL97320.1 | InterPro:PAS | InterPro:PAS-like_dom_sf | InterPro:PAS_2 |
| InterPro:PAS_fold | PFAM:PF00360 | PFAM:PF00512 | PFAM:PF00989 | PFAM:PF01590 | PFAM:PF02518 |
| PFAM:PF08446 | PIRSF:PIRSF000084 | PRINTS:PR01033 | ScanProsite:PS00245 | PFscan:PS50046 | PFscan:PS50109 |
| PFscan:PS50112 | PANTHER:PTHR43719 | PANTHER:PTHR43719:SF12 | InterPro:Phyto_chromo_BS | InterPro:Phyto_chromo_attachment | InterPro:Phytochrome |
| InterPro:Phytochrome_A-E | InterPro:Phytochrome_cen-reg | UniProt:Q6XFQ3 | SMART:SM00065 | SMART:SM00091 | SMART:SM00387 |
| SMART:SM00388 | SUPFAM:SSF47384 | SUPFAM:SSF55781 | SUPFAM:SSF55785 | SUPFAM:SSF55874 | TIGRFAMs:TIGR00229 |
| UniParc:UPI00003504C0 | EnsemblPlantsGene:Zm00001d028905 | EnsemblPlants:Zm00001d028905_P001 | EnsemblPlants:Zm00001d028905_T001 | SEG:seg | : |
Description
phytochromeB1Phytochrome B
Coordinates
chr1:+:50443216..50455013
Molecular Weight (calculated)
127784.0 Da
IEP (calculated)
6.238
GRAVY (calculated)
-0.183
Length
1161 amino acids
Sequence
(BLAST)
(BLAST)
0001: MASGSRATPT RSPSSARPEA PRHAHHHHHS QSSGGSTSRA GGGAAATESV SKAVAQYTLD ARLHAVFEQS GASGRSFDYS QSLRAPPTPS SEQQIAAYLS
0101: RIQRGGHIQP FGCTLAVADD SSFRLLAFSE NSPDLLDLSP HHSVPSLDSS APPHVSLGAD ARLLFSPSSA VLLERAFAAR EISLLNPIWI HSRVSSKPFY
0201: AILHRIDVGV VIDLEPARTE DPALSIAGAV QSQKLAVRAI SRLQALPGGD VKLLCDTVVE HVRELTGYDR VMVYRFHEDE HGEVVAESRR DNLEPYLGLH
0301: YPATDIPQAS RFLFRQNRVR MIADCHATPV RVIQDPGLSQ PLCLVGSTLR APHGCHAQYM ANMGSIASLV MAVIISSGGD DEQTGRGGIS SAMKLWGLVV
0401: CHHTSPRCIP FPLRYACEFL MQAFGLQLNM ELQLAHQLSE KHILRTQTLL CDMLLRDSPT GIVTQSPSIM DLVKCDGAAL YYHGKYYPLG VTPTESQIKD
0501: IIEWLTVFHG DSTGLSTDSL ADAGYLGAAA LGEAVCGMAV AYITPSDYLF WFRSHTAKEI KWGGAKHHPE DKDDGQRMHP RSSFKAFLEV VKSRSLPWEN
0601: AEMDAIHSLQ LILRDSFRDA AEGTNNSKAI VNGQVQLREL ELRGINELSS VAREMVRLIE TATVPIFAVD TDGCINGWNA KIAELTGLSV EEAMGKSLVN
0701: DLIFKESEAT VEKLLSRALR GEEDKNVEIK LKTFGSEQSK GPIFVVVNAC SSRDYTQNIV GVCFVGQDVT GQKVVMDKFV NIQGDYKAIV HNPNPLIPPI
0801: FASDENTSCS EWNTAMEKLT GWSRGEVVGK FLIGEVFGNC CRLKGPDALT KFMVIIHNAI GGQDYEKFPF SFFDKNGKYV QALLTANTRS KMDGKSIGAF
0901: CFLQIASTEI QQAFEIQRQQ EKKCYARMKE LAYICQEIKN PLSGIRFTNS LLQMTDLNDD QRQFLETSSA CEKQMSKIVK DASLQSIEDG SLVLEQSEFS
1001: LGDVMNAVVS QAMLLLRERD LQLIRDIPDE IKDASAYGDQ CRIQQVLADF LLSMVRSAPS ENGWVEIQVR PNVKQNSDGT NTELFIFRFA CPGEGLPADV
1101: VQDMFSNSQW STQEGVGLST CRKILKLMGG EVQYIRESER SFFLIVLEQP QPRPAAGREI V
0101: RIQRGGHIQP FGCTLAVADD SSFRLLAFSE NSPDLLDLSP HHSVPSLDSS APPHVSLGAD ARLLFSPSSA VLLERAFAAR EISLLNPIWI HSRVSSKPFY
0201: AILHRIDVGV VIDLEPARTE DPALSIAGAV QSQKLAVRAI SRLQALPGGD VKLLCDTVVE HVRELTGYDR VMVYRFHEDE HGEVVAESRR DNLEPYLGLH
0301: YPATDIPQAS RFLFRQNRVR MIADCHATPV RVIQDPGLSQ PLCLVGSTLR APHGCHAQYM ANMGSIASLV MAVIISSGGD DEQTGRGGIS SAMKLWGLVV
0401: CHHTSPRCIP FPLRYACEFL MQAFGLQLNM ELQLAHQLSE KHILRTQTLL CDMLLRDSPT GIVTQSPSIM DLVKCDGAAL YYHGKYYPLG VTPTESQIKD
0501: IIEWLTVFHG DSTGLSTDSL ADAGYLGAAA LGEAVCGMAV AYITPSDYLF WFRSHTAKEI KWGGAKHHPE DKDDGQRMHP RSSFKAFLEV VKSRSLPWEN
0601: AEMDAIHSLQ LILRDSFRDA AEGTNNSKAI VNGQVQLREL ELRGINELSS VAREMVRLIE TATVPIFAVD TDGCINGWNA KIAELTGLSV EEAMGKSLVN
0701: DLIFKESEAT VEKLLSRALR GEEDKNVEIK LKTFGSEQSK GPIFVVVNAC SSRDYTQNIV GVCFVGQDVT GQKVVMDKFV NIQGDYKAIV HNPNPLIPPI
0801: FASDENTSCS EWNTAMEKLT GWSRGEVVGK FLIGEVFGNC CRLKGPDALT KFMVIIHNAI GGQDYEKFPF SFFDKNGKYV QALLTANTRS KMDGKSIGAF
0901: CFLQIASTEI QQAFEIQRQQ EKKCYARMKE LAYICQEIKN PLSGIRFTNS LLQMTDLNDD QRQFLETSSA CEKQMSKIVK DASLQSIEDG SLVLEQSEFS
1001: LGDVMNAVVS QAMLLLRERD LQLIRDIPDE IKDASAYGDQ CRIQQVLADF LLSMVRSAPS ENGWVEIQVR PNVKQNSDGT NTELFIFRFA CPGEGLPADV
1101: VQDMFSNSQW STQEGVGLST CRKILKLMGG EVQYIRESER SFFLIVLEQP QPRPAAGREI V
0001: MVSGVGGSGG GRGGGRGGEE EPSSSHTPNN RRGGEQAQSS GTKSLRPRSN TESMSKAIQQ YTVDARLHAV FEQSGESGKS FDYSQSLKTT TYGSSVPEQQ
0101: ITAYLSRIQR GGYIQPFGCM IAVDESSFRI IGYSENAREM LGIMPQSVPT LEKPEILAMG TDVRSLFTSS SSILLERAFV AREITLLNPV WIHSKNTGKP
0201: FYAILHRIDV GVVIDLEPAR TEDPALSIAG AVQSQKLAVR AISQLQALPG GDIKLLCDTV VESVRDLTGY DRVMVYKFHE DEHGEVVAES KRDDLEPYIG
0301: LHYPATDIPQ ASRFLFKQNR VRMIVDCNAT PVLVVQDDRL TQSMCLVGST LRAPHGCHSQ YMANMGSIAS LAMAVIINGN EDDGSNVASG RSSMRLWGLV
0401: VCHHTSSRCI PFPLRYACEF LMQAFGLQLN MELQLALQMS EKRVLRTQTL LCDMLLRDSP AGIVTQSPSI MDLVKCDGAA FLYHGKYYPL GVAPSEVQIK
0501: DVVEWLLANH ADSTGLSTDS LGDAGYPGAA ALGDAVCGMA VAYITKRDFL FWFRSHTAKE IKWGGAKHHP EDKDDGQRMH PRSSFQAFLE VVKSRSQPWE
0601: TAEMDAIHSL QLILRDSFKE SEAAMNSKVV DGVVQPCRDM AGEQGIDELG AVAREMVRLI ETATVPIFAV DAGGCINGWN AKIAELTGLS VEEAMGKSLV
0701: SDLIYKENEA TVNKLLSRAL RGDEEKNVEV KLKTFSPELQ GKAVFVVVNA CSSKDYLNNI VGVCFVGQDV TSQKIVMDKF INIQGDYKAI VHSPNPLIPP
0801: IFAADENTCC LEWNMAMEKL TGWSRSEVIG KMIVGEVFGS CCMLKGPDAL TKFMIVLHNA IGGQDTDKFP FPFFDRNGKF VQALLTANKR VSLEGKVIGA
0901: FCFLQIPSPE LQQALAVQRR QDTECFTKAK ELAYICQVIK NPLSGMRFAN SLLEATDLNE DQKQLLETSV SCEKQISRIV GDMDLESIED GSFVLKREEF
1001: FLGSVINAIV SQAMFLLRDR GLQLIRDIPE EIKSIEVFGD QIRIQQLLAE FLLSIIRYAP SQEWVEIHLS QLSKQMADGF AAIRTEFRMA CPGEGLPPEL
1101: VRDMFHSSRW TSPEGLGLSV CRKILKLMNG EVQYIRESER SYFLIILELP VPRKRPLSTA SGSGDMMLMM PY
0101: ITAYLSRIQR GGYIQPFGCM IAVDESSFRI IGYSENAREM LGIMPQSVPT LEKPEILAMG TDVRSLFTSS SSILLERAFV AREITLLNPV WIHSKNTGKP
0201: FYAILHRIDV GVVIDLEPAR TEDPALSIAG AVQSQKLAVR AISQLQALPG GDIKLLCDTV VESVRDLTGY DRVMVYKFHE DEHGEVVAES KRDDLEPYIG
0301: LHYPATDIPQ ASRFLFKQNR VRMIVDCNAT PVLVVQDDRL TQSMCLVGST LRAPHGCHSQ YMANMGSIAS LAMAVIINGN EDDGSNVASG RSSMRLWGLV
0401: VCHHTSSRCI PFPLRYACEF LMQAFGLQLN MELQLALQMS EKRVLRTQTL LCDMLLRDSP AGIVTQSPSI MDLVKCDGAA FLYHGKYYPL GVAPSEVQIK
0501: DVVEWLLANH ADSTGLSTDS LGDAGYPGAA ALGDAVCGMA VAYITKRDFL FWFRSHTAKE IKWGGAKHHP EDKDDGQRMH PRSSFQAFLE VVKSRSQPWE
0601: TAEMDAIHSL QLILRDSFKE SEAAMNSKVV DGVVQPCRDM AGEQGIDELG AVAREMVRLI ETATVPIFAV DAGGCINGWN AKIAELTGLS VEEAMGKSLV
0701: SDLIYKENEA TVNKLLSRAL RGDEEKNVEV KLKTFSPELQ GKAVFVVVNA CSSKDYLNNI VGVCFVGQDV TSQKIVMDKF INIQGDYKAI VHSPNPLIPP
0801: IFAADENTCC LEWNMAMEKL TGWSRSEVIG KMIVGEVFGS CCMLKGPDAL TKFMIVLHNA IGGQDTDKFP FPFFDRNGKF VQALLTANKR VSLEGKVIGA
0901: FCFLQIPSPE LQQALAVQRR QDTECFTKAK ELAYICQVIK NPLSGMRFAN SLLEATDLNE DQKQLLETSV SCEKQISRIV GDMDLESIED GSFVLKREEF
1001: FLGSVINAIV SQAMFLLRDR GLQLIRDIPE EIKSIEVFGD QIRIQQLLAE FLLSIIRYAP SQEWVEIHLS QLSKQMADGF AAIRTEFRMA CPGEGLPPEL
1101: VRDMFHSSRW TSPEGLGLSV CRKILKLMNG EVQYIRESER SYFLIILELP VPRKRPLSTA SGSGDMMLMM PY
Arabidopsis Description
PHYBPhytochrome [Source:UniProtKB/TrEMBL;Acc:A0A178W0V4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.