Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- plastid 5
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
plasma membrane:
29385242
|
msms PMID:
29385242
doi
Biosystems Engineering, Fraunhofer Institute for Factory Operation and Automation, Joseph-von-Fraunhofer-Straße 1, 39106, Magdeburg, Germany., Institute of Biology/Applied Genetics, Dahlem Centre of Plant Sciences, Free University of Berlin, Albrecht-Thaer-Weg 6, 14195, Berlin, Germany., Leibniz Institute of Plant Genetics and Crop Plant Research, Corrensstraße 3, 06466, Stadt Seeland, Gatersleben, Germany., Leibniz Institute of Vegetable and Ornamental Crops, Theodor-Echtermeyer-Weg 1, 14979, Großbeeren, Germany., Technical University of Denmark, Søltofts Plads, Building 224, 2800, Kongens Lyngby, Denmark.
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| HORVU0Hr1G009910.2 | |
| HORVU1Hr1G017900.1 | nucleus |
| HORVU1Hr1G064320.1 | |
| HORVU1Hr1G076620.2 | cytosol |
| HORVU2Hr1G042110.1 | cytosol |
| HORVU2Hr1G095950.2 | cytosol |
| HORVU2Hr1G109370.1 | |
| HORVU2Hr1G109410.1 | cytosol |
| HORVU2Hr1G110120.3 | |
| HORVU3Hr1G023830.1 | cytosol |
| HORVU3Hr1G028670.16 | |
| HORVU3Hr1G049640.1 | cytosol |
| HORVU3Hr1G072260.1 | cytosol |
| HORVU3Hr1G072850.15 | |
| HORVU4Hr1G023500.2 | |
| HORVU4Hr1G053400.1 | |
| HORVU4Hr1G057220.1 | cytosol |
| HORVU4Hr1G057240.1 | cytosol |
| HORVU4Hr1G090440.2 | |
| HORVU5Hr1G058480.1 | cytosol |
| HORVU5Hr1G092920.4 | |
| HORVU5Hr1G095530.2 | |
| HORVU6Hr1G038750.11 | cytosol |
| HORVU6Hr1G038800.6 | cytosol |
| HORVU6Hr1G053680.5 | |
| HORVU6Hr1G054940.1 | |
| HORVU6Hr1G058740.2 | |
| HORVU6Hr1G075060.26 | |
| HORVU7Hr1G013600.3 | |
| HORVU7Hr1G023890.1 | |
| HORVU7Hr1G067620.2 | cytosol, nucleus |
| HORVU7Hr1G088710.2 | cytosol |
| HORVU7Hr1G111470.1 | cytosol |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4A01G122500.2 | Wheat | plastid | 98.54 | 98.71 |
| TraesCS4B01G182400.1 | Wheat | plastid | 98.46 | 98.63 |
| TraesCS4D01G183400.1 | Wheat | plastid | 97.77 | 98.11 |
| Os03t0309200-01 | Rice | nucleus, plasma membrane | 88.61 | 92.41 |
| Zm00001d028905_P001 | Maize | extracellular | 88.96 | 89.49 |
| EER94971 | Sorghum | plastid | 89.55 | 88.79 |
| Zm00001d047632_P001 | Maize | plastid | 88.01 | 88.16 |
| Zm00001d025231_P001 | Maize | cytosol | 11.13 | 81.25 |
| VIT_05s0077g00940.t01 | Wine grape | cytosol | 74.74 | 77.33 |
| PGSC0003DMT400061712 | Potato | cytosol, plastid | 73.03 | 75.49 |
| GSMUA_Achr3P08340_001 | Banana | nucleus | 69.18 | 74.2 |
| Solyc01g059870.2.1 | Tomato | cytosol | 71.75 | 74.09 |
| KRH36969 | Soybean | nucleus | 72.09 | 74.05 |
| Zm00001d000219_P001 | Maize | cytosol | 7.02 | 73.87 |
| KRH11936 | Soybean | nucleus | 72.52 | 73.72 |
| CDX92112 | Canola | cytosol | 70.38 | 72.49 |
| Solyc05g053410.2.1 | Tomato | nucleus, plastid | 67.64 | 70.47 |
| AT2G18790.1 | Thale cress | nucleus | 70.63 | 70.39 |
| PGSC0003DMT400069974 | Potato | mitochondrion | 67.72 | 70.31 |
| CDX95888 | Canola | cytosol | 70.29 | 70.29 |
| CDX75900 | Canola | cytosol | 69.35 | 70.13 |
| Bra022192.1-P | Field mustard | cytosol | 70.89 | 69.46 |
| AT4G16250.1 | Thale cress | plastid | 67.72 | 67.96 |
| Bra001650.1-P | Field mustard | cytosol | 8.22 | 62.75 |
| CDX82382 | Canola | cytosol | 9.33 | 59.24 |
| HORVU0Hr1G023250.4 | Barley | cytosol | 17.55 | 58.91 |
| HORVU1Hr1G068750.7 | Barley | cytosol | 17.72 | 58.31 |
| HORVU5Hr1G095530.2 | Barley | plastid | 50.94 | 51.87 |
| HORVU4Hr1G008610.2 | Barley | mitochondrion | 46.66 | 48.23 |
| Zm00001d024238_P001 | Maize | cytosol | 16.44 | 43.64 |
| CDY42549 | Canola | cytosol | 8.05 | 41.59 |
Protein Annotations
Description
Phytochrome [Source:UniProtKB/TrEMBL;Acc:A0A287P2I4]
Coordinates
chrchr4H:+:443993786..444001898
Molecular Weight (calculated)
128008.0 Da
IEP (calculated)
6.008
GRAVY (calculated)
-0.142
Length
1168 amino acids
Sequence
(BLAST)
(BLAST)
0001: MASGSRATPT PTRSPSSARP SAPHQHHTQS SGGSTSRAGG GGGGAAGSAA ATESVSKAVA QYTLDAGLHA VFEQSGASGR SFDYSQSLLA PPTPSSEQQI
0101: AAYLSRIQRG GHIQPFGCTL AVADDSSFRL LAFSENAADL LDLSPHHSVP SLDSSAAPPP VSLGADARLL FSPSSGVLLE RAFAAREISL LNPLWIHSRV
0201: SSKPFYAILH RIDVGVVIDL EPARTEDPAL SIAGAVQSQK LAVRAISRLQ ALPGGDVKLL CDTVVEHVRE LTGYDRVMVY KFHDDEHGEV LAESRRGDLE
0301: PYLGLHYPAT DIPQASRFLF RQNRVRMIAD CHAAAVRVIQ DPAMPQPLCL VGSTLRSPHG CHAQYMANMG SIASLVMAVI ISSGGEDEHN MTRGVIPSAM
0401: KLWGLVVCHH TSPRCIPFPL RYACEFLMQA FGLQLNMELQ LAHQLSEKHI LRTQTLLCDM LLRDSPTGIV TQSPSIMDLV KCDGAALFYH GKYYPLGVTP
0501: TEAQIKDIIE WLTVCHGDST GLSTDSLADA GYPGATALGD AVCGMAVAYI TPSDYLFWFR SHTAKEIKWG GAKHHPEDKD DGQRMHPRSS FKAFLEVVKS
0601: RSLPWENAEM DAIHSLQLIL RDSFRDAGEG TSNSKAIVNG QVQLGELELR GIDELSSVAR EMVRLIETAT VPIFAVDTYG CINGWNAKVA ELTGLTVEEA
0701: MGKSLIKDLI FKESEEIVEK LLSQALRGEE GTNVEIKLKT FGSEQSKGPI FVIVNACSSR DYTKNIVGVC FVGQDITGQK VVMDKFVNIQ GDYKAIVHNP
0801: NPLIPPIFAS DENICCSEWN TAMENLTGWS RGEVVGKLLV GEVFGNCCRL KGPDALTKFM IALHNAIGGQ DSEKSPFSFF DKNGKYVQAL LTANTRSKMD
0901: GETIGAFCFL QIASPELQQA FEIQRQQEKK CYARMKELAY ICQEIKNPLS GIRFTNSLLE MTDLKDDQRQ FLETSAACEK QMSKIVKDAS LQSIEDGSLV
1001: LEKGEFSLGN VMNAVVSQVM ILLRERDLQL IRDIPDEIKE ASAYGDQYRI QQVLSDFLLS MVRFAPTENG WVEIQVRPNV KQNSDGTETM LFLFRFACPG
1101: EGLPPDIVQD MFSNARWTTQ EGIGLSVCRK ILKLMGGEVQ YIRESERSFF LIVLELPQPR RSETRDRS
0101: AAYLSRIQRG GHIQPFGCTL AVADDSSFRL LAFSENAADL LDLSPHHSVP SLDSSAAPPP VSLGADARLL FSPSSGVLLE RAFAAREISL LNPLWIHSRV
0201: SSKPFYAILH RIDVGVVIDL EPARTEDPAL SIAGAVQSQK LAVRAISRLQ ALPGGDVKLL CDTVVEHVRE LTGYDRVMVY KFHDDEHGEV LAESRRGDLE
0301: PYLGLHYPAT DIPQASRFLF RQNRVRMIAD CHAAAVRVIQ DPAMPQPLCL VGSTLRSPHG CHAQYMANMG SIASLVMAVI ISSGGEDEHN MTRGVIPSAM
0401: KLWGLVVCHH TSPRCIPFPL RYACEFLMQA FGLQLNMELQ LAHQLSEKHI LRTQTLLCDM LLRDSPTGIV TQSPSIMDLV KCDGAALFYH GKYYPLGVTP
0501: TEAQIKDIIE WLTVCHGDST GLSTDSLADA GYPGATALGD AVCGMAVAYI TPSDYLFWFR SHTAKEIKWG GAKHHPEDKD DGQRMHPRSS FKAFLEVVKS
0601: RSLPWENAEM DAIHSLQLIL RDSFRDAGEG TSNSKAIVNG QVQLGELELR GIDELSSVAR EMVRLIETAT VPIFAVDTYG CINGWNAKVA ELTGLTVEEA
0701: MGKSLIKDLI FKESEEIVEK LLSQALRGEE GTNVEIKLKT FGSEQSKGPI FVIVNACSSR DYTKNIVGVC FVGQDITGQK VVMDKFVNIQ GDYKAIVHNP
0801: NPLIPPIFAS DENICCSEWN TAMENLTGWS RGEVVGKLLV GEVFGNCCRL KGPDALTKFM IALHNAIGGQ DSEKSPFSFF DKNGKYVQAL LTANTRSKMD
0901: GETIGAFCFL QIASPELQQA FEIQRQQEKK CYARMKELAY ICQEIKNPLS GIRFTNSLLE MTDLKDDQRQ FLETSAACEK QMSKIVKDAS LQSIEDGSLV
1001: LEKGEFSLGN VMNAVVSQVM ILLRERDLQL IRDIPDEIKE ASAYGDQYRI QQVLSDFLLS MVRFAPTENG WVEIQVRPNV KQNSDGTETM LFLFRFACPG
1101: EGLPPDIVQD MFSNARWTTQ EGIGLSVCRK ILKLMGGEVQ YIRESERSFF LIVLELPQPR RSETRDRS
0001: MVSGVGGSGG GRGGGRGGEE EPSSSHTPNN RRGGEQAQSS GTKSLRPRSN TESMSKAIQQ YTVDARLHAV FEQSGESGKS FDYSQSLKTT TYGSSVPEQQ
0101: ITAYLSRIQR GGYIQPFGCM IAVDESSFRI IGYSENAREM LGIMPQSVPT LEKPEILAMG TDVRSLFTSS SSILLERAFV AREITLLNPV WIHSKNTGKP
0201: FYAILHRIDV GVVIDLEPAR TEDPALSIAG AVQSQKLAVR AISQLQALPG GDIKLLCDTV VESVRDLTGY DRVMVYKFHE DEHGEVVAES KRDDLEPYIG
0301: LHYPATDIPQ ASRFLFKQNR VRMIVDCNAT PVLVVQDDRL TQSMCLVGST LRAPHGCHSQ YMANMGSIAS LAMAVIINGN EDDGSNVASG RSSMRLWGLV
0401: VCHHTSSRCI PFPLRYACEF LMQAFGLQLN MELQLALQMS EKRVLRTQTL LCDMLLRDSP AGIVTQSPSI MDLVKCDGAA FLYHGKYYPL GVAPSEVQIK
0501: DVVEWLLANH ADSTGLSTDS LGDAGYPGAA ALGDAVCGMA VAYITKRDFL FWFRSHTAKE IKWGGAKHHP EDKDDGQRMH PRSSFQAFLE VVKSRSQPWE
0601: TAEMDAIHSL QLILRDSFKE SEAAMNSKVV DGVVQPCRDM AGEQGIDELG AVAREMVRLI ETATVPIFAV DAGGCINGWN AKIAELTGLS VEEAMGKSLV
0701: SDLIYKENEA TVNKLLSRAL RGDEEKNVEV KLKTFSPELQ GKAVFVVVNA CSSKDYLNNI VGVCFVGQDV TSQKIVMDKF INIQGDYKAI VHSPNPLIPP
0801: IFAADENTCC LEWNMAMEKL TGWSRSEVIG KMIVGEVFGS CCMLKGPDAL TKFMIVLHNA IGGQDTDKFP FPFFDRNGKF VQALLTANKR VSLEGKVIGA
0901: FCFLQIPSPE LQQALAVQRR QDTECFTKAK ELAYICQVIK NPLSGMRFAN SLLEATDLNE DQKQLLETSV SCEKQISRIV GDMDLESIED GSFVLKREEF
1001: FLGSVINAIV SQAMFLLRDR GLQLIRDIPE EIKSIEVFGD QIRIQQLLAE FLLSIIRYAP SQEWVEIHLS QLSKQMADGF AAIRTEFRMA CPGEGLPPEL
1101: VRDMFHSSRW TSPEGLGLSV CRKILKLMNG EVQYIRESER SYFLIILELP VPRKRPLSTA SGSGDMMLMM PY
0101: ITAYLSRIQR GGYIQPFGCM IAVDESSFRI IGYSENAREM LGIMPQSVPT LEKPEILAMG TDVRSLFTSS SSILLERAFV AREITLLNPV WIHSKNTGKP
0201: FYAILHRIDV GVVIDLEPAR TEDPALSIAG AVQSQKLAVR AISQLQALPG GDIKLLCDTV VESVRDLTGY DRVMVYKFHE DEHGEVVAES KRDDLEPYIG
0301: LHYPATDIPQ ASRFLFKQNR VRMIVDCNAT PVLVVQDDRL TQSMCLVGST LRAPHGCHSQ YMANMGSIAS LAMAVIINGN EDDGSNVASG RSSMRLWGLV
0401: VCHHTSSRCI PFPLRYACEF LMQAFGLQLN MELQLALQMS EKRVLRTQTL LCDMLLRDSP AGIVTQSPSI MDLVKCDGAA FLYHGKYYPL GVAPSEVQIK
0501: DVVEWLLANH ADSTGLSTDS LGDAGYPGAA ALGDAVCGMA VAYITKRDFL FWFRSHTAKE IKWGGAKHHP EDKDDGQRMH PRSSFQAFLE VVKSRSQPWE
0601: TAEMDAIHSL QLILRDSFKE SEAAMNSKVV DGVVQPCRDM AGEQGIDELG AVAREMVRLI ETATVPIFAV DAGGCINGWN AKIAELTGLS VEEAMGKSLV
0701: SDLIYKENEA TVNKLLSRAL RGDEEKNVEV KLKTFSPELQ GKAVFVVVNA CSSKDYLNNI VGVCFVGQDV TSQKIVMDKF INIQGDYKAI VHSPNPLIPP
0801: IFAADENTCC LEWNMAMEKL TGWSRSEVIG KMIVGEVFGS CCMLKGPDAL TKFMIVLHNA IGGQDTDKFP FPFFDRNGKF VQALLTANKR VSLEGKVIGA
0901: FCFLQIPSPE LQQALAVQRR QDTECFTKAK ELAYICQVIK NPLSGMRFAN SLLEATDLNE DQKQLLETSV SCEKQISRIV GDMDLESIED GSFVLKREEF
1001: FLGSVINAIV SQAMFLLRDR GLQLIRDIPE EIKSIEVFGD QIRIQQLLAE FLLSIIRYAP SQEWVEIHLS QLSKQMADGF AAIRTEFRMA CPGEGLPPEL
1101: VRDMFHSSRW TSPEGLGLSV CRKILKLMNG EVQYIRESER SYFLIILELP VPRKRPLSTA SGSGDMMLMM PY
Arabidopsis Description
PHYBPhytochrome [Source:UniProtKB/TrEMBL;Acc:A0A178W0V4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.