CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX92112	Canola	cytosol	50.88	10.14
CDX75900	Canola	cytosol	49.12	9.61
CDX95888	Canola	cytosol	49.56	9.59
VIT_05s0077g00940.t01	Wine grape	cytosol	47.79	9.57
Solyc01g059870.2.1	Tomato	cytosol	47.79	9.55
PGSC0003DMT400061712	Potato	cytosol, plastid	47.35	9.47
GSMUA_Achr3P08340_001	Banana	nucleus	42.48	8.82
Solyc05g053410.2.1	Tomato	nucleus, plastid	42.48	8.56
PGSC0003DMT400069974	Potato	mitochondrion	42.04	8.44
KRH11936	Soybean	nucleus	42.92	8.44
Os03t0309200-01	Rice	nucleus, plasma membrane	41.59	8.39
KRH36969	Soybean	nucleus	42.04	8.36
TraesCS4D01G183400.1	Wheat	plastid	42.48	8.25
Zm00001d047632_P001	Maize	plastid	41.59	8.06
TraesCS4B01G182400.1	Wheat	plastid	41.59	8.06
TraesCS4A01G122500.2	Wheat	plastid	41.59	8.06
HORVU4Hr1G053400.1	Barley	plasma membrane	41.59	8.05
EER94971	Sorghum	plastid	41.59	7.98
Zm00001d028905_P001	Maize	extracellular	40.71	7.92
CDY61670	Canola	cytosol	33.63	6.81
CDY22632	Canola	cytosol, plastid	29.65	5.97
CDY06362	Canola	cytosol, plastid	29.2	5.89
CDY38546	Canola	cytosol, plastid	28.76	5.82
CDY06455	Canola	cytosol, mitochondrion, nucleus, plastid	28.76	5.81
CDY50896	Canola	endoplasmic reticulum, plastid, vacuole	29.2	5.68
CDX78827	Canola	cytosol	26.55	5.56
CDX93501	Canola	cytosol	29.2	5.49
Zm00001d024238_P001	Maize	cytosol	0.44	0.23
CDX82382	Canola	cytosol	0.0	0.0
Zm00001d000219_P001	Maize	cytosol	0.0	0.0
Zm00001d025231_P001	Maize	cytosol	0.0	0.0

Protein Annotations

EnsemblPlants:CDY42549	EnsemblPlantsGene:GSBRNA2T00075014001	Gene3D:3.30.450.20	GO:A0A078HZ20	GO:GO:0006139	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:PAS-like_dom_sf	InterPro:PAS_2
PANTHER:PTHR43719	PANTHER:PTHR43719:SF12	PFAM:PF08446	ProteinID:CDY42549	ProteinID:CDY42549.1	SUPFAM:SSF55785
UniParc:UPI0004EC6A9C	UniProt:A0A078HZ20	MapMan:35.1	:	:	:

Description

BnaC08g10540DBnaC08g10540D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HZ20]

Coordinates

chrLK032528:+:157455..158300

Molecular Weight (calculated)

24960.7 Da

IEP (calculated)

8.333

GRAVY (calculated)

-0.340

Length

226 amino acids

Sequence
(BLAST)

001: MVTGGGGETD RKVRNEDAAS SGRRGEHSHP LTSNNHAVTE SVTQSGESGK SFEYSHSVKA TTYSSSVPEQ QITAYLSRIQ RVGCLIAVDD STFAIIGYRE
101: NARETLGLIS PSVPSIDDDK AETLTIDTDL RCRFRPSSIV LLERAFVAQR EITLLIPLWI HSKNTRKPFF QTEDPALSMA GAVQSRKLAC LMTLGTKERM
201: ECRGQAENFW SRGKAVFVVM LKQGLF

Best Arabidopsis Sequence Match ( AT2G18790.1 )
(BLAST)

0001: MVSGVGGSGG GRGGGRGGEE EPSSSHTPNN RRGGEQAQSS GTKSLRPRSN TESMSKAIQQ YTVDARLHAV FEQSGESGKS FDYSQSLKTT TYGSSVPEQQ
0101: ITAYLSRIQR GGYIQPFGCM IAVDESSFRI IGYSENAREM LGIMPQSVPT LEKPEILAMG TDVRSLFTSS SSILLERAFV AREITLLNPV WIHSKNTGKP
0201: FYAILHRIDV GVVIDLEPAR TEDPALSIAG AVQSQKLAVR AISQLQALPG GDIKLLCDTV VESVRDLTGY DRVMVYKFHE DEHGEVVAES KRDDLEPYIG
0301: LHYPATDIPQ ASRFLFKQNR VRMIVDCNAT PVLVVQDDRL TQSMCLVGST LRAPHGCHSQ YMANMGSIAS LAMAVIINGN EDDGSNVASG RSSMRLWGLV
0401: VCHHTSSRCI PFPLRYACEF LMQAFGLQLN MELQLALQMS EKRVLRTQTL LCDMLLRDSP AGIVTQSPSI MDLVKCDGAA FLYHGKYYPL GVAPSEVQIK
0501: DVVEWLLANH ADSTGLSTDS LGDAGYPGAA ALGDAVCGMA VAYITKRDFL FWFRSHTAKE IKWGGAKHHP EDKDDGQRMH PRSSFQAFLE VVKSRSQPWE
0601: TAEMDAIHSL QLILRDSFKE SEAAMNSKVV DGVVQPCRDM AGEQGIDELG AVAREMVRLI ETATVPIFAV DAGGCINGWN AKIAELTGLS VEEAMGKSLV
0701: SDLIYKENEA TVNKLLSRAL RGDEEKNVEV KLKTFSPELQ GKAVFVVVNA CSSKDYLNNI VGVCFVGQDV TSQKIVMDKF INIQGDYKAI VHSPNPLIPP
0801: IFAADENTCC LEWNMAMEKL TGWSRSEVIG KMIVGEVFGS CCMLKGPDAL TKFMIVLHNA IGGQDTDKFP FPFFDRNGKF VQALLTANKR VSLEGKVIGA
0901: FCFLQIPSPE LQQALAVQRR QDTECFTKAK ELAYICQVIK NPLSGMRFAN SLLEATDLNE DQKQLLETSV SCEKQISRIV GDMDLESIED GSFVLKREEF
1001: FLGSVINAIV SQAMFLLRDR GLQLIRDIPE EIKSIEVFGD QIRIQQLLAE FLLSIIRYAP SQEWVEIHLS QLSKQMADGF AAIRTEFRMA CPGEGLPPEL
1101: VRDMFHSSRW TSPEGLGLSV CRKILKLMNG EVQYIRESER SYFLIILELP VPRKRPLSTA SGSGDMMLMM PY

Arabidopsis Description

PHYBPhytochrome [Source:UniProtKB/TrEMBL;Acc:A0A178W0V4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.