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Tomato
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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 3
  • plastid 3
  • cytosol 2
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, mitochondrion, nucleus, plastid
BaCelLo:nucleus
ChloroP:plastid
EpiLoc:plastid
MultiLoc:cytosol
Plant-mPloc:nucleus
PProwler:plastid
TargetP:mitochondrion
WoLF PSORT:nucleus
YLoc:cytosol
PPI

Inferred distinct locusB in Crop

locusBlocations
Solyc01g059870.2.1
Solyc01g102300.2.1 nucleus
Solyc02g070530.2.1
Solyc02g071260.2.1
Solyc02g088610.2.1
Solyc03g058900.1.1
Solyc03g112150.1.1
Solyc04g008590.2.1
Solyc04g054830.2.1
Solyc05g006420.2.1
Solyc05g032820.1.1
Solyc05g050970.2.1
Solyc05g053410.2.1
Solyc06g071790.2.1
Solyc07g045480.2.1
Solyc07g056140.2.1 cytosol, nucleus
Solyc08g016500.2.1
Solyc08g016750.2.1
Solyc08g062930.1.1 cytosol
Solyc09g090100.2.1
Solyc09g092380.2.1
Solyc09g092390.2.1
Solyc10g018300.1.1
Solyc11g069380.1.1
Solyc12g005950.1.1
Solyc12g011120.1.1 cytosol, nucleus
Solyc12g098500.1.1

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT2G18790.1 Solyc09g090100.2.1 AT1G04400.1 11089975
AT2G18790.1 Solyc05g006420.2.1 AT1G10470.1 11691995
AT2G18790.1 Solyc01g059870.2.1 AT2G18790.1 15273290
AT2G18790.1 Solyc05g053410.2.1 AT2G18790.1 15273290
AT2G18790.1 Solyc01g059870.2.1 AT2G18790.1 19286967
AT2G18790.1 Solyc05g053410.2.1 AT2G18790.1 19286967
AT2G18790.1 Solyc08g062930.1.1 AT2G26190.1 23964902
AT2G18790.1 Solyc08g062930.1.1 AT2G26190.1 23964902
AT2G18790.1 Solyc12g005950.1.1 AT2G32950.1 11752373
AT2G18790.1 Solyc04g008590.2.1 AT2G34590.1 23964902
AT2G18790.1 Solyc08g016750.2.1 AT2G34590.1 23964902
AT2G18790.1 Solyc05g050970.2.1 AT2G45290.1 23964902
AT2G18790.1 Solyc10g018300.1.1 AT2G45290.1 23964902
AT2G18790.1 Solyc01g102300.2.1 AT2G46970.1 23964902
AT2G18790.1 Solyc01g102300.2.1 AT2G46970.1 23964902
AT2G18790.1 Solyc05g032820.1.1 AT4G13940.1 23964902
AT2G18790.1 Solyc09g092380.2.1 AT4G13940.1 23964902
AT2G18790.1 Solyc09g092390.2.1 AT4G13940.1 23964902
AT2G18790.1 Solyc12g098500.1.1 AT4G13940.1 23964902
AT2G18790.1 Solyc01g059870.2.1 AT4G16250.1 15273290
AT2G18790.1 Solyc05g053410.2.1 AT4G16250.1 15273290
AT2G18790.1 Solyc01g059870.2.1 AT4G16250.1 19286967
AT2G18790.1 Solyc05g053410.2.1 AT4G16250.1 19286967
AT2G18790.1 Solyc02g071260.2.1 AT4G18130.1 15273290
AT2G18790.1 Solyc02g071260.2.1 AT4G18130.1 19286967
AT2G18790.1 Solyc03g112150.1.1 AT4G20360.1 23964902
AT2G18790.1 Solyc06g071790.2.1 AT4G20360.1 23964902
AT2G18790.1 Solyc02g088610.2.1 AT5G15450.1 23964902
AT2G18790.1 Solyc07g045480.2.1 AT5G35840.1 15273290
AT2G18790.1 Solyc07g045480.2.1 AT5G35840.1 19286967
AT2G18790.1 Solyc02g070530.2.1 AT5G46240.1 23964902
AT2G18790.1 Solyc03g058900.1.1 AT5G46240.1 23964902
AT2G18790.1 Solyc08g016500.2.1 AT5G46240.1 23964902
AT2G18790.1 Solyc07g056140.2.1 AT5G48300.1 23964902
AT2G18790.1 Solyc12g011120.1.1 AT5G48300.1 23964902
AT2G18790.1 Solyc07g056140.2.1 AT5G48300.1 23964902
AT2G18790.1 Solyc12g011120.1.1 AT5G48300.1 23964902
AT2G18790.1 Solyc07g056140.2.1 AT5G48300.1 23964902
AT2G18790.1 Solyc12g011120.1.1 AT5G48300.1 23964902
AT2G18790.1 Solyc11g069380.1.1 AT5G60600.1 23964902
AT2G18790.1 Solyc04g054830.2.1 AT5G65090.1 23964902
AT4G16250.1 Solyc01g059870.2.1 AT2G18790.1 15273290
AT4G16250.1 Solyc05g053410.2.1 AT2G18790.1 15273290
AT4G16250.1 Solyc01g059870.2.1 AT2G18790.1 19286967
AT4G16250.1 Solyc05g053410.2.1 AT2G18790.1 19286967
AT4G16250.1 Solyc01g059870.2.1 AT4G16250.1 15273290
AT4G16250.1 Solyc05g053410.2.1 AT4G16250.1 15273290
AT4G16250.1 Solyc01g059870.2.1 AT4G16250.1 19286967
AT4G16250.1 Solyc05g053410.2.1 AT4G16250.1 19286967
AT4G16250.1 Solyc02g071260.2.1 AT4G18130.1 15273290
AT4G16250.1 Solyc02g071260.2.1 AT4G18130.1 19286967
AT4G16250.1 Solyc07g045480.2.1 AT5G35840.1 19286967
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400061712 Potato cytosol, plastid 95.58 95.66
VIT_05s0077g00940.t01 Wine grape cytosol 84.35 84.5
Solyc05g053410.2.1 Tomato nucleus, plastid 79.4 80.11
KRH36969 Soybean nucleus 79.93 79.51
KRH11936 Soybean nucleus 79.49 78.24
Os03t0309200-01 Rice nucleus, plasma membrane 73.56 74.29
AT2G18790.1 Thale cress nucleus 76.22 73.55
Bra022192.1-P Field mustard cytosol 76.57 72.65
TraesCS4D01G183400.1 Wheat plastid 74.27 72.16
TraesCS4B01G182400.1 Wheat plastid 74.27 72.04
GSMUA_Achr3P08340_001 Banana nucleus 69.32 71.99
TraesCS4A01G122500.2 Wheat plastid 74.18 71.96
Zm00001d028905_P001 Maize extracellular 73.74 71.83
HORVU4Hr1G053400.1 Barley plasma membrane 74.09 71.75
EER94971 Sorghum plastid 74.27 71.31
AT4G16250.1 Thale cress plastid 73.3 71.22
Zm00001d047632_P001 Maize plastid 73.12 70.93
Bra001650.1-P Field mustard cytosol 8.75 64.71
Solyc02g071260.2.1 Tomato cytosol, plastid 59.86 59.54
Zm00001d025231_P001 Maize cytosol 8.13 57.5
Zm00001d000219_P001 Maize cytosol 5.39 54.95
Solyc07g045480.2.1 Tomato plastid 52.87 53.49
Solyc10g044670.1.1 Tomato extracellular 52.43 52.8
CDY42549 Canola cytosol 9.55 47.79
Zm00001d024238_P001 Maize cytosol 13.26 34.09
Protein Annotations
Gene3D:1.10.287.130MapMan:26.1.1.1MapMan:26.4.1.2Gene3D:3.30.450.20Gene3D:3.30.450.270Gene3D:3.30.450.40
Gene3D:3.30.565.10EMBL:AJ002282EMBL:AJ002283EMBL:AJ002284EMBL:AJ002285EMBL:AJ002287
ProteinID:CAA05293.1InterPro:GAFInterPro:GAF-like_dom_sfGO:GO:0000155GO:GO:0000160GO:GO:0003674
GO:GO:0003824GO:GO:0004871GO:GO:0005488GO:GO:0005515GO:GO:0005575GO:GO:0005622
GO:GO:0005623GO:GO:0006139GO:GO:0006351GO:GO:0006355GO:GO:0006464GO:GO:0007154
GO:GO:0007165GO:GO:0008150GO:GO:0008152GO:GO:0009058GO:GO:0009584GO:GO:0009585
GO:GO:0009605GO:GO:0009628GO:GO:0009881GO:GO:0009987GO:GO:0016301GO:GO:0016740
GO:GO:0017006GO:GO:0018298GO:GO:0019538GO:GO:0023014GO:GO:0038023GO:GO:0042803
GO:GO:0050896InterPro:HATPase_CInterPro:HATPase_C_sfInterPro:HisK_dim/PInterPro:HisK_dim/P_sfInterPro:His_kinase_dom
InterPro:IPR000014InterPro:IPR005467InterPro:IPR016132InterPro:IPR029016InterPro:IPR036890InterPro:PAS
InterPro:PAS-like_dom_sfInterPro:PAS_2InterPro:PAS_foldPFAM:PF00360PFAM:PF00512PFAM:PF00989
PFAM:PF01590PFAM:PF02518PFAM:PF08446PIRSF:PIRSF000084PRINTS:PR01033ScanProsite:PS00245
PFscan:PS50046PFscan:PS50109PFscan:PS50112PANTHER:PTHR43719PANTHER:PTHR43719:SF12InterPro:Phyto_chromo_BS
InterPro:Phyto_chromo_attachmentInterPro:PhytochromeInterPro:Phytochrome_A-EInterPro:Phytochrome_cen-regUniProt:Q9ZS62SMART:SM00065
SMART:SM00091SMART:SM00387SMART:SM00388SUPFAM:SSF47384SUPFAM:SSF55781SUPFAM:SSF55785
SUPFAM:SSF55874EnsemblPlantsGene:Solyc01g059870.2EnsemblPlants:Solyc01g059870.2.1TIGRFAMs:TIGR00229UniParc:UPI00000A866ASEG:seg
Description
PHYB1Phytochrome B1 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZS62]
Coordinates
chr1:-:68860531..68867469
Molecular Weight (calculated)
125588.0 Da
IEP (calculated)
6.072
GRAVY (calculated)
-0.171
Length
1131 amino acids
Sequence
(BLAST)
0001: MASGSRTKHS YHNSSQGQAQ SSGTSNMNYK DSISKAIAQY TADARLHAVF EQSGESGKSF DYSQSVKTTT QSVPERQITA YLTKIQRGGH IQPFGCMIAV
0101: DEASFRIIAY SENACEMLSL TPQSVPSLDK SEILTVGTDV RTLFTPSSSV LLERAFGARE ITLLNPIWIH SKNSGKPFYA ILHRVDVGIV IDLEPARTED
0201: PALSIAGAVQ SQKLAVRAIS HLQSLPGGDI KLLCDTVVES VRELTGYDRV MVYKFHEDEH GEVVAESKRS DLEPYIGLHY PATDIPQASR FLFKQNRVRM
0301: IVDCHATPVR VTQDESLMQP LCLVGSTLRA PHGCHAQYMA NMGSIASLTL AVIINGNDEE AVGGGRNSMR LWGLVVGHHT SVRSIPFPLR YACEFLMQAF
0401: GLQLNMELQL ASQLSEKHVL RTQTLLCDML LRDSPPGIVT QSPSIMDLVK CDGAALYYQR KYYPLGVTPT EAQIKDIVEW LLAYHGDSTG LSTDSLADAG
0501: YPGAASLGDA VCGMAVAYIT SKDFLFWFRS HTAKEIKWGG AKHHPEDKDD GQRMHPRSSF KAFLEVVKSR SSPWENAEMD AIHSLQLILR DSFKDAEASN
0601: SKAIVHALGE MELQGIDELS SVAREMVRLI ETATAPIFGV DVNGRINGWN EKVVELTGLS AEEAKGKSLV HDLLYKESQE SAEKLLYNAL RGVEGKNVEI
0701: KLRTFGAEQV EKAVFLVVNA CSSRDYTNSI VGVSFVGQDV TGEKIVMDKF IHIQGDYKAI VHSPNPLIPP IFASDENTSC SEWNTAMEKL SGWSREEIVG
0801: KMLVGEIFGS CCRLKGPDAM TKFMIVLHNA IGGQDTDKFP FSFFDRNGKY VQALLTANKR VNMEGDTIGA FCFIQIASPE LQQALRVQRQ QEKKCYSQMK
0901: ELAYICQEVK SPLNGIRFTN SLLEATNLTE YQKQYLETSA ACERQMSKII RDVDLENIED GSLTLEKEDF FLGSVIDAVV SQVMLLLREK GVQLIRDIPE
1001: EIKTLTVHGD QVRIQQVLAD FLLNMVRYAP SPDGWVEIQL RPSMMPISDG ATVVHIELRI ICPGEGLPPE LVQDMFHSSR WVTQEGLGLS MCRKMLKLMN
1101: GEIQYIRESE RCYFMIILDL PMTRKGPKSV G
Best Arabidopsis Sequence Match ( AT2G18790.1 )
(BLAST)
0001: MVSGVGGSGG GRGGGRGGEE EPSSSHTPNN RRGGEQAQSS GTKSLRPRSN TESMSKAIQQ YTVDARLHAV FEQSGESGKS FDYSQSLKTT TYGSSVPEQQ
0101: ITAYLSRIQR GGYIQPFGCM IAVDESSFRI IGYSENAREM LGIMPQSVPT LEKPEILAMG TDVRSLFTSS SSILLERAFV AREITLLNPV WIHSKNTGKP
0201: FYAILHRIDV GVVIDLEPAR TEDPALSIAG AVQSQKLAVR AISQLQALPG GDIKLLCDTV VESVRDLTGY DRVMVYKFHE DEHGEVVAES KRDDLEPYIG
0301: LHYPATDIPQ ASRFLFKQNR VRMIVDCNAT PVLVVQDDRL TQSMCLVGST LRAPHGCHSQ YMANMGSIAS LAMAVIINGN EDDGSNVASG RSSMRLWGLV
0401: VCHHTSSRCI PFPLRYACEF LMQAFGLQLN MELQLALQMS EKRVLRTQTL LCDMLLRDSP AGIVTQSPSI MDLVKCDGAA FLYHGKYYPL GVAPSEVQIK
0501: DVVEWLLANH ADSTGLSTDS LGDAGYPGAA ALGDAVCGMA VAYITKRDFL FWFRSHTAKE IKWGGAKHHP EDKDDGQRMH PRSSFQAFLE VVKSRSQPWE
0601: TAEMDAIHSL QLILRDSFKE SEAAMNSKVV DGVVQPCRDM AGEQGIDELG AVAREMVRLI ETATVPIFAV DAGGCINGWN AKIAELTGLS VEEAMGKSLV
0701: SDLIYKENEA TVNKLLSRAL RGDEEKNVEV KLKTFSPELQ GKAVFVVVNA CSSKDYLNNI VGVCFVGQDV TSQKIVMDKF INIQGDYKAI VHSPNPLIPP
0801: IFAADENTCC LEWNMAMEKL TGWSRSEVIG KMIVGEVFGS CCMLKGPDAL TKFMIVLHNA IGGQDTDKFP FPFFDRNGKF VQALLTANKR VSLEGKVIGA
0901: FCFLQIPSPE LQQALAVQRR QDTECFTKAK ELAYICQVIK NPLSGMRFAN SLLEATDLNE DQKQLLETSV SCEKQISRIV GDMDLESIED GSFVLKREEF
1001: FLGSVINAIV SQAMFLLRDR GLQLIRDIPE EIKSIEVFGD QIRIQQLLAE FLLSIIRYAP SQEWVEIHLS QLSKQMADGF AAIRTEFRMA CPGEGLPPEL
1101: VRDMFHSSRW TSPEGLGLSV CRKILKLMNG EVQYIRESER SYFLIILELP VPRKRPLSTA SGSGDMMLMM PY
Arabidopsis Description
PHYBPhytochrome [Source:UniProtKB/TrEMBL;Acc:A0A178W0V4]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.