Factsheet for Solyc12g098500.1.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, unclear, plastid, cytosol, nucleus

Predictor Summary:

cytosol 4
vacuole 1
mitochondrion 2
plastid 1

Predictors

GFP

MS/MS

Papers

extracellular: 22364583
plastid: 22908117
nucleus: 25464976
unclear: 26455813

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 26455813 doi

P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff

Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.

msms PMID: 22364583 doi

P Shah, AL Powell, R Orlando, C Bergmann, G Gutierrez-Sanchez

Complex Carbohydrate Research Center, University of Georgia, Athens, Georgia, United States.

msms PMID: 25464976 doi

Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400011624	Potato	cytosol	99.38	99.38
Solyc09g092390.2.1	Tomato	extracellular	95.05	95.05
Solyc09g092380.2.1	Tomato	extracellular	94.43	94.43
KRH42750	Soybean	endoplasmic reticulum, nucleus	93.4	93.4
VIT_05s0029g00330.t01	Wine grape	cytosol	92.78	92.78
AT4G13940.1	Thale cress	cytosol	91.55	91.55
CDY47309	Canola	cytosol	91.55	91.36
Bra001921.1-P	Field mustard	cytosol	91.13	91.13
AT3G23810.1	Thale cress	cytosol	91.13	91.13
CDY01177	Canola	cytosol, extracellular	91.13	91.13
KXG28344	Sorghum	cytosol	91.13	91.13
CDX77483	Canola	cytosol	86.39	91.09
Zm00001d049239_P001	Maize	plasma membrane, plastid	90.93	90.93
KRH31567	Soybean	cytosol, mitochondrion	90.93	90.93
Bra032750.1-P	Field mustard	cytosol	90.93	90.93
CDY50423	Canola	cytosol	90.93	90.93
Bra014984.1-P	Field mustard	cytosol	90.93	90.93
Bra028345.1-P	Field mustard	cytosol	90.72	90.72
GSMUA_Achr9P01630_001	Banana	cytosol	79.38	90.59
TraesCS2B01G521600.2	Wheat	cytosol, golgi, plastid	89.9	89.9
GSMUA_Achr8P17490_001	Banana	cytosol, mitochondrion	72.16	89.74
TraesCS2D01G493500.1	Wheat	cytosol	89.69	89.69
TraesCS2A01G493600.2	Wheat	cytosol, golgi, unclear	89.69	89.69
GSMUA_Achr6P06530_001	Banana	cytosol	78.56	89.65
TraesCS2B01G517500.1	Wheat	cytosol, extracellular, golgi	89.48	89.48
KRH58847	Soybean	nucleus	92.78	89.46
TraesCS2D01G489900.1	Wheat	cytosol	89.28	89.28
TraesCS2A01G489600.2	Wheat	cytosol, golgi, unclear	89.07	89.07
CDX85127	Canola	cytosol	86.6	88.42
Zm00001d004646_P001	Maize	cytosol	42.27	87.98
Bra014002.1-P	Field mustard	cytosol	86.6	87.87
CDY58805	Canola	cytosol	85.77	87.58
CDY53211	Canola	cytosol	85.77	87.39
HORVU7Hr1G023890.1	Barley	cytosol	11.55	86.15
HORVU2Hr1G109370.1	Barley	cytosol, plastid	89.28	85.74
HORVU2Hr1G110120.3	Barley	cytosol, plastid	89.69	85.46
Os11t0455500-01	Rice	extracellular, plasma membrane	89.48	84.27
CDY18090	Canola	cytosol	87.22	83.27
CDY50106	Canola	cytosol	87.22	83.27
Solyc05g032820.1.1	Tomato	plastid	35.88	78.38
CDY67319	Canola	cytosol	28.04	73.91
HORVU1Hr1G064320.1	Barley	plastid	8.87	36.13

Protein Annotations

KEGG:00270+3.3.1.1	Gene3D:3.40.50.1480	Gene3D:3.40.50.720	MapMan:7.3.2	InterPro:Adenosylhomocysteinase	InterPro:Adenosylhomocysteinase-like
InterPro:Ado_hCys_hydrolase_NAD-bd	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004013	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0006139
GO:GO:0006730	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016787
GO:GO:0019510	GO:GO:0033353	GO:GO:0051287	UniProt:K4DHM3	HAMAP:MF_00563	InterPro:NAD(P)-bd_dom_sf
PFAM:PF00670	PFAM:PF05221	PIRSF:PIRSF001109	ScanProsite:PS00739	PANTHER:PTHR23420	PANTHER:PTHR23420:SF12
InterPro:S-Ado-L-homoCys_hydrolase_CS	SMART:SM00996	SMART:SM00997	SUPFAM:SSF51735	SUPFAM:SSF52283	EnsemblPlantsGene:Solyc12g098500.1
EnsemblPlants:Solyc12g098500.1.1	TIGRFAMs:TIGR00936	UniParc:UPI000276A1FB	SEG:seg	:	:

Description

Adenosylhomocysteinase [Source:UniProtKB/TrEMBL;Acc:K4DHM3]

Coordinates

chr12:+:65989079..65991255

Molecular Weight (calculated)

53153.3 Da

IEP (calculated)

6.033

GRAVY (calculated)

-0.125

Length

485 amino acids

Sequence
(BLAST)

001: MALIVEKTTS GREYKVKDMS QADFGRLEIE LAEVEMPGLM ACRTEFGPSQ PFKGAKITGS LHMTIQTAVL IETLTALGAE VRWCSCNIFS TQDHAAAATA
101: RDSAAVFAWK GETLQEYWWC TERALDWGPG GGPDLIVDDG GDATLLIHEG VKAEEEYAKT GKFPDPNSTD NVEFQLVLTI IKDGLKSDPL KYTKMKERLV
201: GVSEETTTGV KRLYQMQANG TLLFPAINVN DSVTKSKFDN LYGCRHSLPD GLMRATDVMI AGKVALIAGY GDVGKGCAAA MKQAGARVIV TEIDPICALQ
301: ATMEGLQVLP LEDVVSGIDI FVTTTGNKDI IMVDHMRKMK NNAIVCNIGH FDNEIDMLGL ETYPGVKRIT IKPQTDRWVF PDTKSGILVL AEGRLMNLGC
401: ATGHPSFVMS CSFTNQVIAQ LELWKEKASG KYEKKVYVLP KHLDEKVAAL HLGQLGVKLT KLSKDQADYI SVPVEGPYKP AHYRY

Best Arabidopsis Sequence Match ( AT4G13940.1 )
(BLAST)

001: MALLVEKTSS GREYKVKDMS QADFGRLELE LAEVEMPGLM ACRTEFGPSQ PFKGARITGS LHMTIQTAVL IETLTALGAE VRWCSCNIFS TQDHAAAAIA
101: RDSAAVFAWK GETLQEYWWC TERALDWGPG GGPDLIVDDG GDATLLIHEG VKAEEIFEKT GQVPDPTSTD NPEFQIVLSI IKEGLQVDPK KYHKMKERLV
201: GVSEETTTGV KRLYQMQQNG TLLFPAINVN DSVTKSKFDN LYGCRHSLPD GLMRATDVMI AGKVAVICGY GDVGKGCAAA MKTAGARVIV TEIDPICALQ
301: ALMEGLQVLT LEDVVSEADI FVTTTGNKDI IMVDHMRKMK NNAIVCNIGH FDNEIDMLGL ETYPGVKRIT IKPQTDRWVF PETKAGIIVL AEGRLMNLGC
401: ATGHPSFVMS CSFTNQVIAQ LELWNEKASG KYEKKVYVLP KHLDEKVALL HLGKLGARLT KLSKDQSDYV SIPIEGPYKP PHYRY

Arabidopsis Description

SAHH1Adenosylhomocysteinase 1 [Source:UniProtKB/Swiss-Prot;Acc:O23255]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.