CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, nucleus

Predictor Summary:

cytosol 4
vacuole 1
mitochondrion 2
peroxisome 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
endoplasmic reticulum: 27224218
nucleus: 27291164
endoplasmic reticulum: 28499913
mitochondrion: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27291164 doi

X Yin, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

msms PMID: 27224218 doi

X Wang, S Komatsu

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH58847	Soybean	nucleus	98.56	95.03
VIT_05s0029g00330.t01	Wine grape	cytosol	94.02	94.02
GSMUA_Achr9P01630_001	Banana	cytosol	82.27	93.88
PGSC0003DMT400011624	Potato	cytosol	93.61	93.61
Solyc12g098500.1.1	Tomato	cytosol, extracellular, nucleus, plastid, unclear	93.4	93.4
Solyc09g092390.2.1	Tomato	extracellular	93.2	93.2
GSMUA_Achr8P17490_001	Banana	cytosol, mitochondrion	74.85	93.08
Solyc09g092380.2.1	Tomato	extracellular	92.99	92.99
GSMUA_Achr6P06530_001	Banana	cytosol	81.44	92.94
KRH31567	Soybean	cytosol, mitochondrion	92.58	92.58
Solyc05g032820.1.1	Tomato	plastid	33.81	73.87
KRG89762	Soybean	plastid	24.12	50.0

Protein Annotations

KEGG:00270+3.3.1.1	EntrezGene:100786939	Gene3D:3.40.50.1480	Gene3D:3.40.50.720	MapMan:7.3.2	EMBL:ACUP02004823
ProteinID:AMO27397.1	InterPro:Adenosylhomocysteinase	InterPro:Adenosylhomocysteinase-like	InterPro:Ado_hCys_hydrolase_NAD-bd	EnsemblPlantsGene:GLYMA_08G108800	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0004013	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0006139	GO:GO:0006730	GO:GO:0008150
GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016787	GO:GO:0019510	GO:GO:0033353
GO:GO:0051287	UniProt:I1KS65	EnsemblPlants:KRH42750	ProteinID:KRH42750	ProteinID:KRH42750.1	HAMAP:MF_00563
InterPro:NAD(P)-bd_dom_sf	PFAM:PF00670	PFAM:PF05221	PIRSF:PIRSF001109	ScanProsite:PS00738	ScanProsite:PS00739
PANTHER:PTHR23420	PANTHER:PTHR23420:SF12	MetaCyc:PWY-5041	InterPro:S-Ado-L-homoCys_hydrolase_CS	SMART:SM00996	SMART:SM00997
SUPFAM:SSF51735	SUPFAM:SSF52283	TIGRFAMs:TIGR00936	UniParc:UPI0002338DF6	SEG:seg	:

Description

hypothetical protein

Coordinates

chr8:-:8350015..8352720

Molecular Weight (calculated)

53288.3 Da

IEP (calculated)

5.681

GRAVY (calculated)

-0.138

Length

485 amino acids

Sequence
(BLAST)

001: MALLVEKTTS GREYKVKDLS QADFGRLEIE LAEVEMPGLM ACRTEFGPSQ PFKGARITGS LHMTIQTAVL IETLTALGAE VRWCSCNIFS TQDHAAAAIA
101: RDSAAVFAWK GETLQEYWWC TERALDWGPG GGPDLIVDDG GDATLLIHEG VKAEELYEKT GELPDPNSTD NAEFQIVLTI IRDGLKTDPT RYRKMKERLV
201: GVSEETTTGV KRLYQMQANG TLLFPAINVN DSVTKSKFDN LYGCRHSLPD GLMRATDVMI AGKVAVVAGY GDVGKGCAAA MKQAGARVIV TEIDPICALQ
301: ALMEGLQVLT LEDVVSEADI FVTTTGNKDI IMVDHMRKMK NNAIVCNIGH FDNEIDMLGL ENYPGVKRIT IKPQTDRWVF PETNTGIIVL AEGRLMNLGC
401: ATGHPSFVMS CSFTNQVIAQ LELWKEKSTG KYEKKVYVLP KHLDEKVAAL HLGKLGAKLT QLSKSQADYI SVPVEGPYKP AHYRY

Best Arabidopsis Sequence Match ( AT4G13940.1 )
(BLAST)

001: MALLVEKTSS GREYKVKDMS QADFGRLELE LAEVEMPGLM ACRTEFGPSQ PFKGARITGS LHMTIQTAVL IETLTALGAE VRWCSCNIFS TQDHAAAAIA
101: RDSAAVFAWK GETLQEYWWC TERALDWGPG GGPDLIVDDG GDATLLIHEG VKAEEIFEKT GQVPDPTSTD NPEFQIVLSI IKEGLQVDPK KYHKMKERLV
201: GVSEETTTGV KRLYQMQQNG TLLFPAINVN DSVTKSKFDN LYGCRHSLPD GLMRATDVMI AGKVAVICGY GDVGKGCAAA MKTAGARVIV TEIDPICALQ
301: ALMEGLQVLT LEDVVSEADI FVTTTGNKDI IMVDHMRKMK NNAIVCNIGH FDNEIDMLGL ETYPGVKRIT IKPQTDRWVF PETKAGIIVL AEGRLMNLGC
401: ATGHPSFVMS CSFTNQVIAQ LELWNEKASG KYEKKVYVLP KHLDEKVALL HLGKLGARLT KLSKDQSDYV SIPIEGPYKP PHYRY

Arabidopsis Description

SAHH1Adenosylhomocysteinase 1 [Source:UniProtKB/Swiss-Prot;Acc:O23255]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.