CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
vacuole 1
mitochondrion 3
peroxisome 2
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH42750	Soybean	endoplasmic reticulum, nucleus	50.0	24.12
KRH58847	Soybean	nucleus	50.0	23.26
KXG28344	Sorghum	cytosol	45.73	22.06
KRH31567	Soybean	cytosol, mitochondrion	45.3	21.86
Zm00001d049239_P001	Maize	plasma membrane, plastid	45.3	21.86
TraesCS2B01G517500.1	Wheat	cytosol, extracellular, golgi	44.87	21.65
TraesCS2A01G489600.2	Wheat	cytosol, golgi, unclear	44.44	21.44
TraesCS2A01G493600.2	Wheat	cytosol, golgi, unclear	44.44	21.44
TraesCS2B01G521600.2	Wheat	cytosol, golgi, plastid	44.44	21.44
TraesCS2D01G489900.1	Wheat	cytosol	44.44	21.44
TraesCS2D01G493500.1	Wheat	cytosol	44.44	21.44
Os11t0455500-01	Rice	extracellular, plasma membrane	42.73	19.42
HORVU7Hr1G023890.1	Barley	cytosol	2.99	10.77
CDY40156	Canola	cytosol	3.85	10.0
Zm00001d004646_P001	Maize	cytosol	9.4	9.44

Protein Annotations

KEGG:00270+3.3.1.1	Gene3D:3.40.50.1480	MapMan:35.1	EMBL:ACUP02012270	InterPro:Adenosylhomocysteinase-like	EnsemblPlantsGene:GLYMA_20G047200
GO:GO:0003674	GO:GO:0003824	GO:GO:0004013	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005829	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016787	GO:GO:0033353	UniProt:K7N1M7	EnsemblPlants:KRG89762	ProteinID:KRG89762	ProteinID:KRG89762.1
PFAM:PF05221	PANTHER:PTHR23420	PANTHER:PTHR23420:SF12	MetaCyc:PWY-5041	SUPFAM:SSF52283	UniParc:UPI000296AD5F
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr20:+:8866246..8867263

Molecular Weight (calculated)

26871.5 Da

IEP (calculated)

5.576

GRAVY (calculated)

-0.091

Length

234 amino acids

Sequence
(BLAST)

001: MAFLVEKTTQ VVTSTRSMTF CRATPMLLQH LLHPRPRRCH YCTERALDWV PGGGPNLIVD HGDDATLLIH EGVKAEELYE KTKELLDPNS TDNAEFQIVL
101: TIIRDGLYQM QPNGTLLFPA INVTDFVTNN KVMSLFPPDI VPFVLKLKWG FEPFNCLTNM TDYDEYGTPL DRETFMKELE TFYRHHSIVL STYNIPCDAF
201: MEFKPPKFYT VVVLSVVFIY SRATQTIADT SCRL

Best Arabidopsis Sequence Match ( AT4G13940.4 )
(BLAST)

001: MALLVEKTSS GREYKVKDMS QADFGRLELE LAEVEMPGLM ACRTEFGPSQ PFKGARITGS LHMTIQTAVL IETLTALGAE VRWCSCNIFS TQDHAAAAIA
101: RDSAAVFAWK GETLQEYWWC TERALDWGPG GGPDLIVDDG GDATLLIHEG VKAEEIFEKT GQVPDPTSTD NPEFQIVLSI IKEGLQVDPK KYHKMKERLV
201: GVSEETTTGV KRLYQMQQNG TLLFPAINVN DSVTKSKFDN LYGCRHSLPD GLMRATDVMI AGKVAVICGY GDVGKGCAAA MKTAGARVIV TEIDPICALQ
301: ALMEGLQVRI YLWFCVGLWW ESGTV

Arabidopsis Description

SAHH1Adenosylhomocysteinase 1 [Source:UniProtKB/Swiss-Prot;Acc:O23255]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.