Factsheet for TraesCS2B01G517500.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi, extracellular, cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, extracellular, golgi
Any Predictor:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

extracellular: 19786127
golgi: 23128297

msms PMID: 19786127 doi

FJ Kong, A Oyanagi, S Komatsu

National Institute of Crop Science, Tsukuba 305-8518, Japan.

msms, gfp PMID: 23128297 doi

M Suliman, AL Chateigner-Boutin, M Francin-Allami, A Partier, B Bouchet, J Salse, C Pont, J Marion, H Rogniaux, D Tessier, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2D01G489900.1	Wheat	cytosol	99.59	99.59
TraesCS2A01G489600.2	Wheat	cytosol, golgi, unclear	99.38	99.38
TraesCS2B01G521600.2	Wheat	cytosol, golgi, plastid	97.73	97.73
HORVU2Hr1G109370.1	Barley	cytosol, plastid	99.59	95.64
KXG28344	Sorghum	cytosol	94.02	94.02
Zm00001d049239_P001	Maize	plasma membrane, plastid	93.81	93.81
GSMUA_Achr8P17490_001	Banana	cytosol, mitochondrion	74.85	93.08
GSMUA_Achr9P01630_001	Banana	cytosol	81.44	92.94
GSMUA_Achr6P06530_001	Banana	cytosol	80.82	92.24
AT4G13940.1	Thale cress	cytosol	91.13	91.13
VIT_05s0029g00330.t01	Wine grape	cytosol	90.93	90.93
Bra032750.1-P	Field mustard	cytosol	90.93	90.93
VIT_17s0000g09840.t01	Wine grape	cytosol	90.72	90.72
AT3G23810.1	Thale cress	cytosol	90.31	90.31
Bra001921.1-P	Field mustard	cytosol	90.31	90.31
Zm00001d004646_P001	Maize	cytosol	43.3	90.13
Solyc09g092390.2.1	Tomato	extracellular	90.1	90.1
Bra014984.1-P	Field mustard	cytosol	90.1	90.1
Bra028345.1-P	Field mustard	cytosol	89.9	89.9
PGSC0003DMT400011624	Potato	cytosol	89.69	89.69
Solyc09g092380.2.1	Tomato	extracellular	89.69	89.69
Solyc12g098500.1.1	Tomato	cytosol, extracellular, nucleus, plastid, unclear	89.48	89.48
Os11t0455500-01	Rice	extracellular, plasma membrane	94.02	88.54
Bra014002.1-P	Field mustard	cytosol	86.19	87.45
Solyc05g032820.1.1	Tomato	plastid	33.2	72.52
CDY40156	Canola	cytosol	10.93	58.89
KRG89762	Soybean	plastid	21.65	44.87

Protein Annotations

KEGG:00270+3.3.1.1	Gene3D:3.40.50.1480	Gene3D:3.40.50.720	MapMan:7.3.2	InterPro:Adenosylhomocysteinase	InterPro:Adenosylhomocysteinase-like
InterPro:Ado_hCys_hydrolase_NAD-bd	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004013	GO:GO:0005488
GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016787
GO:GO:0019510	GO:GO:0051287	HAMAP:MF_00563	InterPro:NAD(P)-bd_dom_sf	PFAM:PF00670	PFAM:PF05221
PIRSF:PIRSF001109	ScanProsite:PS00738	ScanProsite:PS00739	PANTHER:PTHR23420	PANTHER:PTHR23420:SF12	InterPro:S-Ado-L-homoCys_hydrolase_CS
SMART:SM00996	SMART:SM00997	SUPFAM:SSF51735	SUPFAM:SSF52283	TIGRFAMs:TIGR00936	EnsemblPlantsGene:TraesCS2B01G517500
EnsemblPlants:TraesCS2B01G517500.1	TIGR:cd00401	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr2B:+:712597414..712600384

Molecular Weight (calculated)

53229.2 Da

IEP (calculated)

5.718

GRAVY (calculated)

-0.137

Length

485 amino acids

Sequence
(BLAST)

001: MALSVEKTAS GREYKVKDLS QADFGRLELE LAEVEMPGLM ACRAEFGPSQ PFKGARISGS LHMTIQTAVL IETLTALGAE VRWCSCNIFS TQDHAAAAIA
101: RDSAAVFAWK GETLEEYWWC TERCLDWGAG GGPDLIVDDG GDATLLIHEG VKAEEEFEKS GKVPDPESTD NPEFKIVLTI IRDGLKTDAR KYRKMKERLV
201: GVSEETTTGV KRLYQMQESG TLLFPAINVN DSVTKSKFDN LYGCRHSLPD GLMRATDVMI AGKVAVVCGY GDVGKGCAAA LKQAGARVIV TEIDPICALQ
301: ALMEGIQILT LEDVVSDADI FVTTTGNKDI IMVDHMRKMK NNAIVCNIGH FDNEIDMNGL ETYPGVKRIT IKPQTDRWVF PETNTGIIVL AEGRLMNLGC
401: ATGHPSFVMS CSFTNQVIAQ LELWKEKATG KYEKKVYVLP KHLDEKVAAL HLGKLGARLT KLTKAQSEYI SIPVEGPYKP AAYRY

Best Arabidopsis Sequence Match ( AT4G13940.1 )
(BLAST)

001: MALLVEKTSS GREYKVKDMS QADFGRLELE LAEVEMPGLM ACRTEFGPSQ PFKGARITGS LHMTIQTAVL IETLTALGAE VRWCSCNIFS TQDHAAAAIA
101: RDSAAVFAWK GETLQEYWWC TERALDWGPG GGPDLIVDDG GDATLLIHEG VKAEEIFEKT GQVPDPTSTD NPEFQIVLSI IKEGLQVDPK KYHKMKERLV
201: GVSEETTTGV KRLYQMQQNG TLLFPAINVN DSVTKSKFDN LYGCRHSLPD GLMRATDVMI AGKVAVICGY GDVGKGCAAA MKTAGARVIV TEIDPICALQ
301: ALMEGLQVLT LEDVVSEADI FVTTTGNKDI IMVDHMRKMK NNAIVCNIGH FDNEIDMLGL ETYPGVKRIT IKPQTDRWVF PETKAGIIVL AEGRLMNLGC
401: ATGHPSFVMS CSFTNQVIAQ LELWNEKASG KYEKKVYVLP KHLDEKVALL HLGKLGARLT KLSKDQSDYV SIPIEGPYKP PHYRY

Arabidopsis Description

SAHH1Adenosylhomocysteinase 1 [Source:UniProtKB/Swiss-Prot;Acc:O23255]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.