Factsheet for VIT_17s0000g09840.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
plastid 1
mitochondrion 2
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_05s0029g00330.t01	Wine grape	cytosol	93.2	93.2
GSMUA_Achr9P01630_001	Banana	cytosol	81.24	92.71
GSMUA_Achr8P17490_001	Banana	cytosol, mitochondrion	74.43	92.56
GSMUA_Achr6P06530_001	Banana	cytosol	81.03	92.47
TraesCS2D01G489900.1	Wheat	cytosol	91.13	91.13
TraesCS2A01G489600.2	Wheat	cytosol, golgi, unclear	90.72	90.72
TraesCS2B01G517500.1	Wheat	cytosol, extracellular, golgi	90.72	90.72
KXG28344	Sorghum	cytosol	90.72	90.72
Zm00001d049239_P001	Maize	plasma membrane, plastid	90.52	90.52
TraesCS2A01G493600.2	Wheat	cytosol, golgi, unclear	90.31	90.31
TraesCS2D01G493500.1	Wheat	cytosol	90.31	90.31
TraesCS2B01G521600.2	Wheat	cytosol, golgi, plastid	90.1	90.1
Zm00001d004646_P001	Maize	cytosol	42.89	89.27
HORVU2Hr1G109370.1	Barley	cytosol, plastid	90.72	87.13
HORVU7Hr1G023890.1	Barley	cytosol	11.55	86.15
HORVU2Hr1G110120.3	Barley	cytosol, plastid	89.9	85.66
Os11t0455500-01	Rice	extracellular, plasma membrane	90.1	84.85
HORVU1Hr1G064320.1	Barley	plastid	8.66	35.29

Protein Annotations

KEGG:00270+3.3.1.1	EntrezGene:100265604	wikigene:100265604	Gene3D:3.40.50.1480	Gene3D:3.40.50.720	MapMan:7.3.2
InterPro:Adenosylhomocysteinase	InterPro:Adenosylhomocysteinase-like	InterPro:Ado_hCys_hydrolase_NAD-bd	ProteinID:CCB42911	ProteinID:CCB42911.1	UniProt:F6GTM7
EMBL:FN594950	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004013	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0006139
GO:GO:0006730	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016787
GO:GO:0019510	GO:GO:0033353	GO:GO:0051287	EntrezGene:LOC100265604	wikigene:LOC100265604	HAMAP:MF_00563
InterPro:NAD(P)-bd_dom_sf	PFAM:PF00670	PFAM:PF05221	PIRSF:PIRSF001109	ScanProsite:PS00738	ScanProsite:PS00739
PANTHER:PTHR23420	PANTHER:PTHR23420:SF12	InterPro:S-Ado-L-homoCys_hydrolase_CS	SMART:SM00996	SMART:SM00997	SUPFAM:SSF51735
SUPFAM:SSF52283	TIGR:TC51951	TIGR:TC61278	TIGRFAMs:TIGR00936	UniParc:UPI0001985192	ArrayExpress:VIT_17s0000g09840
EnsemblPlantsGene:VIT_17s0000g09840	EnsemblPlants:VIT_17s0000g09840.t01	unigene:Vvi.494	RefSeq:XP_002278000	RefSeq:XP_002278000.1	SEG:seg

Description

Adenosylhomocysteinase [Source:UniProtKB/TrEMBL;Acc:F6GTM7]

Coordinates

chr17:+:11735945..11738132

Molecular Weight (calculated)

53082.2 Da

IEP (calculated)

5.992

GRAVY (calculated)

-0.089

Length

485 amino acids

Sequence
(BLAST)

001: MALVVEKTTS GREYKVKDMS QADFGRLEIE LAEVEMPGLM ACRTEFGPQQ PFKGARITGS LHMTIQTAVL IETLTALGAE VRWCSCNIFS TQDHAAAAIA
101: RDSAAVFAWK GETLQEYWWC TERALDWGPG GGPDLIVDDG GDATLLIHEG VKAEEEYERS GKLPDPASTD NAEFQIVLGI IKEGLSVDPC KYRKMKERLV
201: GVSEETTTGV KRLYQMQANG TLLFAAINVN DSVTKSKFDN LYGCRHSLPD GLMRATDVMI AGKVAVVCGY GDVGKGCAAA LKQAGAQVIV TEIDPICALQ
301: ALMEGIPVLT LEDVVSKADI FVTTTGNKDI IMVHHMKQMK NNAIVCNIGH FDNEIDMLGL ETYPGVKRIT IKPQTDRWVF PETNSGIIIL AEGRLMNLGC
401: ATGHPSFVMS CSFTNQVIAQ LELWKEKATG KYEKKVYVLP KHLDEKVAAL HLGKLGAKLT KLSPEQAAYI SVPVEGPYKP THYRY

Best Arabidopsis Sequence Match ( AT4G13940.1 )
(BLAST)

001: MALLVEKTSS GREYKVKDMS QADFGRLELE LAEVEMPGLM ACRTEFGPSQ PFKGARITGS LHMTIQTAVL IETLTALGAE VRWCSCNIFS TQDHAAAAIA
101: RDSAAVFAWK GETLQEYWWC TERALDWGPG GGPDLIVDDG GDATLLIHEG VKAEEIFEKT GQVPDPTSTD NPEFQIVLSI IKEGLQVDPK KYHKMKERLV
201: GVSEETTTGV KRLYQMQQNG TLLFPAINVN DSVTKSKFDN LYGCRHSLPD GLMRATDVMI AGKVAVICGY GDVGKGCAAA MKTAGARVIV TEIDPICALQ
301: ALMEGLQVLT LEDVVSEADI FVTTTGNKDI IMVDHMRKMK NNAIVCNIGH FDNEIDMLGL ETYPGVKRIT IKPQTDRWVF PETKAGIIVL AEGRLMNLGC
401: ATGHPSFVMS CSFTNQVIAQ LELWNEKASG KYEKKVYVLP KHLDEKVALL HLGKLGARLT KLSKDQSDYV SIPIEGPYKP PHYRY

Arabidopsis Description

SAHH1Adenosylhomocysteinase 1 [Source:UniProtKB/Swiss-Prot;Acc:O23255]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.