CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU1Hr1G064320.1	Barley	plastid	35.56	26.89
CDY58805	Canola	cytosol	61.11	11.58
CDY01177	Canola	cytosol, extracellular	62.22	11.55
CDY50423	Canola	cytosol	62.22	11.55
CDY47309	Canola	cytosol	61.11	11.32
CDX85127	Canola	cytosol	58.89	11.16
TraesCS2D01G493500.1	Wheat	cytosol	60.0	11.13
TraesCS2B01G521600.2	Wheat	cytosol, golgi, plastid	60.0	11.13
TraesCS2A01G493600.2	Wheat	cytosol, golgi, unclear	60.0	11.13
CDX77483	Canola	cytosol	56.67	11.09
TraesCS2D01G489900.1	Wheat	cytosol	58.89	10.93
TraesCS2B01G517500.1	Wheat	cytosol, extracellular, golgi	58.89	10.93
TraesCS2A01G489600.2	Wheat	cytosol, golgi, unclear	58.89	10.93
CDY53211	Canola	cytosol	56.67	10.71
Zm00001d049239_P001	Maize	plasma membrane, plastid	56.67	10.52
KXG28344	Sorghum	cytosol	56.67	10.52
Os11t0455500-01	Rice	extracellular, plasma membrane	57.78	10.1
CDY50106	Canola	cytosol	56.67	10.04
CDY18090	Canola	cytosol	56.67	10.04
KRG89762	Soybean	plastid	10.0	3.85
CDY67319	Canola	cytosol	4.44	2.17
Zm00001d004646_P001	Maize	cytosol	4.44	1.72

Protein Annotations

EnsemblPlants:CDY40156	EnsemblPlantsGene:GSBRNA2T00069091001	Gene3D:3.40.50.1480	GO:A0A078HR42	InterPro:Adenosylhomocysteinase-like	KEGG:00270+3.3.1.1
MetaCyc:PWY-5041	PANTHER:PTHR23420	PANTHER:PTHR23420:SF12	PFAM:PF05221	ProteinID:CDY40156	ProteinID:CDY40156.1
SEG:seg	SUPFAM:SSF52283	UniParc:UPI0004EF1F4E	UniPathway:UPA00314	UniProt:A0A078HR42	MapMan:35.1

Description

BnaC06g05330DBnaC06g05330D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HR42]

Coordinates

chrLK032464:+:188966..189370

Molecular Weight (calculated)

9767.5 Da

IEP (calculated)

9.572

GRAVY (calculated)

-0.744

Length

90 amino acids

Sequence
(BLAST)

1: MPGLMACRTE FGPSQPFKGA RITGSLHMTI QTAVLIETLT ALGAERKQRR EEEGRNHNPN PQNHESIRGS GGDGSSRSDS SSMAVKAWFP

Best Arabidopsis Sequence Match ( AT4G13940.4 )
(BLAST)

001: MALLVEKTSS GREYKVKDMS QADFGRLELE LAEVEMPGLM ACRTEFGPSQ PFKGARITGS LHMTIQTAVL IETLTALGAE VRWCSCNIFS TQDHAAAAIA
101: RDSAAVFAWK GETLQEYWWC TERALDWGPG GGPDLIVDDG GDATLLIHEG VKAEEIFEKT GQVPDPTSTD NPEFQIVLSI IKEGLQVDPK KYHKMKERLV
201: GVSEETTTGV KRLYQMQQNG TLLFPAINVN DSVTKSKFDN LYGCRHSLPD GLMRATDVMI AGKVAVICGY GDVGKGCAAA MKTAGARVIV TEIDPICALQ
301: ALMEGLQVRI YLWFCVGLWW ESGTV

Arabidopsis Description

SAHH1Adenosylhomocysteinase 1 [Source:UniProtKB/Swiss-Prot;Acc:O23255]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.