CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, cytosol

Predictor Summary:

cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, extracellular
Any Predictor:	cytosol
BaCelLo:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

extracellular: 29364282

msms PMID: 29364282 doi

S Pahlow, A Ostendorp, L Krüßel, J Kehr

Molecular Plant Genetics, Universität Hamburg., Molecular Plant Genetics, Universität Hamburg; julia.kehr@uni-hamburg.de.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra032750.1-P	Field mustard	cytosol	99.79	99.79
CDY50423	Canola	cytosol	99.59	99.59
CDY47309	Canola	cytosol	98.76	98.56
AT4G13940.1	Thale cress	cytosol	96.91	96.91
CDX77483	Canola	cytosol	91.55	96.52
CDX85127	Canola	cytosol	91.75	93.68
CDY58805	Canola	cytosol	91.55	93.47
CDY53211	Canola	cytosol	91.13	92.86
Solyc09g092390.2.1	Tomato	extracellular	92.37	92.37
Solyc09g092380.2.1	Tomato	extracellular	92.37	92.37
GSMUA_Achr9P01630_001	Banana	cytosol	80.62	92.0
PGSC0003DMT400011624	Potato	cytosol	91.55	91.55
KRH31567	Soybean	cytosol, mitochondrion	91.55	91.55
VIT_05s0029g00330.t01	Wine grape	cytosol	91.34	91.34
Solyc12g098500.1.1	Tomato	cytosol, extracellular, nucleus, plastid, unclear	91.13	91.13
GSMUA_Achr6P06530_001	Banana	cytosol	79.59	90.82
GSMUA_Achr8P17490_001	Banana	cytosol, mitochondrion	72.99	90.77
CDY50106	Canola	cytosol	91.75	87.6
CDY18090	Canola	cytosol	91.75	87.6
CDY67319	Canola	cytosol	30.31	79.89
Solyc05g032820.1.1	Tomato	plastid	33.4	72.97
CDY40156	Canola	cytosol	11.55	62.22

Protein Annotations

KEGG:00270+3.3.1.1	Gene3D:3.40.50.1480	Gene3D:3.40.50.720	MapMan:7.3.2	GO:A0A078EJ50	InterPro:Adenosylhomocysteinase
InterPro:Adenosylhomocysteinase-like	InterPro:Ado_hCys_hydrolase_NAD-bd	EnsemblPlants:CDY01177	ProteinID:CDY01177	ProteinID:CDY01177.1	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0004013	GO:GO:0005488	GO:GO:0006139	GO:GO:0008150
GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016787	GO:GO:0019510	GO:GO:0051287
EnsemblPlantsGene:GSBRNA2T00111266001	HAMAP:MF_00563	InterPro:NAD(P)-bd_dom_sf	PFAM:PF00670	PFAM:PF05221	PIRSF:PIRSF001109
ScanProsite:PS00738	ScanProsite:PS00739	PANTHER:PTHR23420	PANTHER:PTHR23420:SF11	MetaCyc:PWY-5041	InterPro:S-Ado-L-homoCys_hydrolase_CS
SMART:SM00996	SMART:SM00997	SUPFAM:SSF51735	SUPFAM:SSF52283	TIGRFAMs:TIGR00936	UniPathway:UPA00314
UniParc:UPI0004EBBC27	SEG:seg	:	:	:	:

Description

BnaA04g06420D

Coordinates

chrLK031924:+:788434..790469

Molecular Weight (calculated)

53277.4 Da

IEP (calculated)

5.661

GRAVY (calculated)

-0.112

Length

485 amino acids

Sequence
(BLAST)

001: MALVVEKTSS GREYKVKDMS QADFGRLELE LAEVEMPGLM ACRTEFGPSQ PFKGARITGS LHMTIQTAVL IETLTALGAE VRWCSCNIFS TQDHAAAAIA
101: RDSAAVFAWK GETLQEYWWC TERALDWGPG GGPDLIVDDG GDATLLIHEG VKAEEIFEKT GQVPDPTSTD NPEFQIVLSI IKEGLQVDPK KYHKMKERLV
201: GVSEETTTGV KRLYQMQETG ALLFPAINVN DSVTKSKFDN LYGCRHSLPD GLMRATDVMI AGKVVVVCGY GDVGKGCAAA MKTAGARVIV TEIDPICALQ
301: AMMEGLQVLT LEDVVSEADI FVTTTGNKDI IMVDHMRKMK NNAIVCNIGH FDNEIDMLGL ETFPGVKRIT IKPQTDRWVF PDTKSGIIVL AEGRLMNLGC
401: ATGHPSFVMS CSFTNQVIAQ LELWNEKSSG KYEKKVYVLP KHLDEKVAAL HLGKLGAKLT KLTKDQSDYV SIPIEGPYKP AHYRY

Best Arabidopsis Sequence Match ( AT4G13940.1 )
(BLAST)

001: MALLVEKTSS GREYKVKDMS QADFGRLELE LAEVEMPGLM ACRTEFGPSQ PFKGARITGS LHMTIQTAVL IETLTALGAE VRWCSCNIFS TQDHAAAAIA
101: RDSAAVFAWK GETLQEYWWC TERALDWGPG GGPDLIVDDG GDATLLIHEG VKAEEIFEKT GQVPDPTSTD NPEFQIVLSI IKEGLQVDPK KYHKMKERLV
201: GVSEETTTGV KRLYQMQQNG TLLFPAINVN DSVTKSKFDN LYGCRHSLPD GLMRATDVMI AGKVAVICGY GDVGKGCAAA MKTAGARVIV TEIDPICALQ
301: ALMEGLQVLT LEDVVSEADI FVTTTGNKDI IMVDHMRKMK NNAIVCNIGH FDNEIDMLGL ETYPGVKRIT IKPQTDRWVF PETKAGIIVL AEGRLMNLGC
401: ATGHPSFVMS CSFTNQVIAQ LELWNEKASG KYEKKVYVLP KHLDEKVALL HLGKLGARLT KLSKDQSDYV SIPIEGPYKP PHYRY

Arabidopsis Description

SAHH1Adenosylhomocysteinase 1 [Source:UniProtKB/Swiss-Prot;Acc:O23255]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.