Factsheet for Solyc09g092380.2.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

cytosol 4
vacuole 1
peroxisome 1
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

extracellular: 22364583
extracellular: 22892874
plastid: 22908117
nucleus: 25464976
plastid: 26371478
unclear: 26455813
nucleus: 28394025
extracellular: 29876421

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 22892874 doi

EH Konozy, H Rogniaux, M Causse, M Faurobert

Unité de Génétique et Amélioration des Fruits et Légumes, INRA, BP 94, 84143 Montfavet, France. ehkonozy@yahoo.com

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

msms PMID: 26371478 doi

M Suzuki, S Takahashi, T Kondo, H Dohra, Y Ito, Y Kiriiwa, M Hayashi, S Kamiya, M Kato, M Fujiwara, Y Fukao, M Kobayashi, N Nagata, R Motohashi

Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.

msms PMID: 26455813 doi

P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff

Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.

msms PMID: 22364583 doi

P Shah, AL Powell, R Orlando, C Bergmann, G Gutierrez-Sanchez

Complex Carbohydrate Research Center, University of Georgia, Athens, Georgia, United States.

msms PMID: 25464976 doi

Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc09g092390.2.1	Tomato	extracellular	98.97	98.97
Solyc12g098500.1.1	Tomato	cytosol, extracellular, nucleus, plastid, unclear	94.43	94.43
KRH42750	Soybean	endoplasmic reticulum, nucleus	92.99	92.99
Bra032750.1-P	Field mustard	cytosol	92.58	92.58
CDY01177	Canola	cytosol, extracellular	92.37	92.37
CDY47309	Canola	cytosol	92.37	92.18
CDY50423	Canola	cytosol	92.16	92.16
VIT_05s0029g00330.t01	Wine grape	cytosol	92.16	92.16
GSMUA_Achr8P17490_001	Banana	cytosol, mitochondrion	74.02	92.05
AT3G23810.1	Thale cress	cytosol	91.96	91.96
Bra001921.1-P	Field mustard	cytosol	91.75	91.75
Bra014984.1-P	Field mustard	cytosol	91.55	91.55
GSMUA_Achr9P01630_001	Banana	cytosol	80.21	91.53
CDX77483	Canola	cytosol	86.8	91.52
AT4G13940.1	Thale cress	cytosol	91.13	91.13
Bra028345.1-P	Field mustard	cytosol	90.93	90.93
KRH31567	Soybean	cytosol, mitochondrion	90.93	90.93
GSMUA_Achr6P06530_001	Banana	cytosol	79.59	90.82
Zm00001d049239_P001	Maize	plasma membrane, plastid	90.72	90.72
KXG28344	Sorghum	cytosol	90.52	90.52
TraesCS2B01G521600.2	Wheat	cytosol, golgi, plastid	89.9	89.9
TraesCS2D01G493500.1	Wheat	cytosol	89.69	89.69
TraesCS2A01G493600.2	Wheat	cytosol, golgi, unclear	89.69	89.69
TraesCS2B01G517500.1	Wheat	cytosol, extracellular, golgi	89.69	89.69
TraesCS2D01G489900.1	Wheat	cytosol	89.48	89.48
TraesCS2A01G489600.2	Wheat	cytosol, golgi, unclear	89.28	89.28
Zm00001d004646_P001	Maize	cytosol	42.89	89.27
KRH58847	Soybean	nucleus	92.37	89.07
CDX85127	Canola	cytosol	86.8	88.63
Bra014002.1-P	Field mustard	cytosol	87.22	88.49
CDY53211	Canola	cytosol	86.19	87.82
CDY58805	Canola	cytosol	85.98	87.79
HORVU2Hr1G109370.1	Barley	cytosol, plastid	89.48	85.94
HORVU2Hr1G110120.3	Barley	cytosol, plastid	89.69	85.46
Os11t0455500-01	Rice	extracellular, plasma membrane	89.48	84.27
CDY50106	Canola	cytosol	87.22	83.27
CDY18090	Canola	cytosol	87.22	83.27
HORVU7Hr1G023890.1	Barley	cytosol	11.13	83.08
CDY67319	Canola	cytosol	29.07	76.63
Solyc05g032820.1.1	Tomato	plastid	34.64	75.68
HORVU1Hr1G064320.1	Barley	plastid	8.45	34.45

Protein Annotations

KEGG:00270+3.3.1.1	Gene3D:3.40.50.1480	Gene3D:3.40.50.720	MapMan:7.3.2	InterPro:Adenosylhomocysteinase	InterPro:Adenosylhomocysteinase-like
InterPro:Ado_hCys_hydrolase_NAD-bd	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004013	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0006139
GO:GO:0006730	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016787
GO:GO:0019510	GO:GO:0033353	GO:GO:0051287	UniProt:K4CWR4	HAMAP:MF_00563	InterPro:NAD(P)-bd_dom_sf
PFAM:PF00670	PFAM:PF05221	PIRSF:PIRSF001109	ScanProsite:PS00738	ScanProsite:PS00739	PANTHER:PTHR23420
PANTHER:PTHR23420:SF11	InterPro:S-Ado-L-homoCys_hydrolase_CS	SMART:SM00996	SMART:SM00997	SUPFAM:SSF51735	SUPFAM:SSF52283
EnsemblPlantsGene:Solyc09g092380.2	EnsemblPlants:Solyc09g092380.2.1	TIGRFAMs:TIGR00936	UniParc:UPI000276BB88	SEG:seg	:

Description

Adenosylhomocysteinase [Source:UniProtKB/TrEMBL;Acc:K4CWR4]

Coordinates

chr9:+:71495672..71500178

Molecular Weight (calculated)

53154.1 Da

IEP (calculated)

5.657

GRAVY (calculated)

-0.124

Length

485 amino acids

Sequence
(BLAST)

001: MALLVEKTTS GREYKVKDMS QADFGRLEIE LAEVEMPGLM ASRAEFGPSQ PFKGAKITGS LHMTIQTAVL IETLTALGAE VRWCSCNIFS TQDHAAAAIA
101: RDSAAVFAWK GETLQEYWWC TERALDWGPG GGPDLIVDDG GDATLLIHEG VKAEEEFAKN GTVPDPTSTD NVEFQLVLTI IKESLKTDPL RYTKMKERLV
201: GVSEETTTGV KRLYQMQANG SLLFPAINVN DSVTKSKFDN LYGCRHSLPD GLMRATDVMI AGKVALVAGY GDVGKGCAAA MKQAGARVIV TEIDPICALQ
301: ATMEGLQVLP LEDVVSEVDI FVTTTGNKDI IMVDHMRKMK NNAIVCNIGH FDNEIDMHGL ETFPGVKRIT IKPQTDRWVF PDTNSGIIVL AEGRLMNLGC
401: ATGHPSFVMS CSFTNQVIAQ LELWNERSSG KYEKKVYVLP KHLDEKVAAL HLGKLGAKLT KLTKDQADYI SVPVEGPYKP AHYRY

Best Arabidopsis Sequence Match ( AT3G23810.1 )
(BLAST)

001: MALLVEKTSS GREYKVKDMS QADFGRLEIE LAEVEMPGLV SCVTEFGPSQ PLKGARITGS LHMTIQTAVL IETLTALGAE VRWCSCNIFS TQDHAAAAIA
101: RDSAAVFAWK GETLQEYWWC TERALDWGPG GGPDLIVDDG GDATLLIHEG VKAEEIFAKN GTFPDPTSTD NPEFQIVLSI IKDGLQVDPK KYHKMKERLV
201: GVSEETTTGV KRLYQMQETG ALLFPAINVN DSVTKSKFDN LYGCRHSLPD GLMRATDVMI AGKVAVICGY GDVGKGCAAA MKTAGARVIV TEIDPICALQ
301: ALMEGLQVLT LEDVVSEADI FCTTTGNKDI IMVDHMRKMK NNAIVCNIGH FDNEIDMLGL ETYPGVKRIT IKPQTDRWVF PDTNSGIIVL AEGRLMNLGC
401: ATGHPSFVMS CSFTNQVIAQ LELWNEKSSG KYEKKVYVLP KHLDEKVAAL HLGKLGARLT KLTKDQSDYV SIPVEGPYKP VHYRY

Arabidopsis Description

SAHH2Adenosylhomocysteinase [Source:UniProtKB/TrEMBL;Acc:A0A178VEP9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.