CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

cytosol 4
vacuole 1
mitochondrion 2
peroxisome 1
plastid 1

Predictors

GFP

MS/MS

Papers

mitochondrion: 27780359

msms PMID: 27780359 doi

G Mustafa, S Komatsu

Graduate School of Life and Environmental Science, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH42750	Soybean	endoplasmic reticulum, nucleus	92.58	92.58
VIT_05s0029g00330.t01	Wine grape	cytosol	92.37	92.37
CDX77483	Canola	cytosol	87.42	92.17
AT4G13940.1	Thale cress	cytosol	92.16	92.16
Bra001921.1-P	Field mustard	cytosol	91.96	91.96
Bra014984.1-P	Field mustard	cytosol	91.75	91.75
AT3G23810.1	Thale cress	cytosol	91.55	91.55
CDY01177	Canola	cytosol, extracellular	91.55	91.55
Bra028345.1-P	Field mustard	cytosol	91.34	91.34
PGSC0003DMT400011624	Potato	cytosol	91.34	91.34
CDY50423	Canola	cytosol	91.34	91.34
Bra032750.1-P	Field mustard	cytosol	91.34	91.34
CDY47309	Canola	cytosol	91.34	91.15
Solyc12g098500.1.1	Tomato	cytosol, extracellular, nucleus, plastid, unclear	90.93	90.93
Solyc09g092380.2.1	Tomato	extracellular	90.93	90.93
GSMUA_Achr9P01630_001	Banana	cytosol	79.59	90.82
Solyc09g092390.2.1	Tomato	extracellular	90.72	90.72
GSMUA_Achr6P06530_001	Banana	cytosol	79.38	90.59
GSMUA_Achr8P17490_001	Banana	cytosol, mitochondrion	72.16	89.74
KRH58847	Soybean	nucleus	92.37	89.07
CDX85127	Canola	cytosol	87.22	89.05
CDY53211	Canola	cytosol	86.6	88.24
Bra014002.1-P	Field mustard	cytosol	86.39	87.66
CDY58805	Canola	cytosol	85.77	87.58
CDY50106	Canola	cytosol	87.84	83.86
CDY18090	Canola	cytosol	87.84	83.86
Solyc05g032820.1.1	Tomato	plastid	34.23	74.77
CDY67319	Canola	cytosol	28.25	74.46
KRG89762	Soybean	plastid	21.86	45.3

Protein Annotations

KEGG:00270+3.3.1.1	EntrezGene:100787210	Gene3D:3.40.50.1480	Gene3D:3.40.50.720	MapMan:7.3.2	EMBL:ACUP02007146
InterPro:Adenosylhomocysteinase	InterPro:Adenosylhomocysteinase-like	InterPro:Ado_hCys_hydrolase_NAD-bd	EnsemblPlantsGene:GLYMA_11G254700	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0004013	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005829	GO:GO:0006139	GO:GO:0006730	GO:GO:0008150	GO:GO:0008152
GO:GO:0009056	GO:GO:0009987	GO:GO:0016787	GO:GO:0019510	GO:GO:0033353	GO:GO:0051287
UniProt:I1LN30	EnsemblPlants:KRH31567	ProteinID:KRH31567	ProteinID:KRH31567.1	HAMAP:MF_00563	InterPro:NAD(P)-bd_dom_sf
PFAM:PF00670	PFAM:PF05221	PIRSF:PIRSF001109	ScanProsite:PS00738	ScanProsite:PS00739	PANTHER:PTHR23420
PANTHER:PTHR23420:SF11	MetaCyc:PWY-5041	InterPro:S-Ado-L-homoCys_hydrolase_CS	SMART:SM00996	SMART:SM00997	SUPFAM:SSF51735
SUPFAM:SSF52283	TIGRFAMs:TIGR00936	UniParc:UPI000233D6ED	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr11:-:34500802..34502756

Molecular Weight (calculated)

53335.3 Da

IEP (calculated)

6.150

GRAVY (calculated)

-0.164

Length

485 amino acids

Sequence
(BLAST)

001: MALLVEKTSS GREYKVKDMT QADFGRLEIE LAEVEMPGLM SSRTEFGPSQ PFKGARITGS LHMTIQTAVL IETLTALGAE VRWCSCNIFS TQDHAAAAIA
101: RDSASVFAWK GETLQEYWWC TERALDWGPG GGPDLIVDDG GDTTLLIHEG VKAEEIFEKT GQFPDPASSD NAEFQIVLSI IRDGLKTDPK RYHKMKDRIV
201: GVSEETTTGV KRLYQMQANG SLLFPAINVN DSVTKSKFDN LYGCRHSLPD GLMRATDVMI AGKVAVVCGY GDVGKGCASA MKQAGARVIV TEIDPICALQ
301: ALMEGLQVLT LEDVVSEADI FVTTTGNKDI IMLDHMKKMK NNAIVCNIGH FDNEIDMLGL ETCPGVKRIN IKPQTDRWVF PDTKRGIIVL AEGRLMNLGC
401: ATGHPSFVMS CSFTNQVIAQ LELWKEKGSG KYEKKVYVLP KHLDEKVASL HLGQLGARLT KLSKDQADYI SVPVEGPYKP AHYRY

Best Arabidopsis Sequence Match ( AT4G13940.1 )
(BLAST)

001: MALLVEKTSS GREYKVKDMS QADFGRLELE LAEVEMPGLM ACRTEFGPSQ PFKGARITGS LHMTIQTAVL IETLTALGAE VRWCSCNIFS TQDHAAAAIA
101: RDSAAVFAWK GETLQEYWWC TERALDWGPG GGPDLIVDDG GDATLLIHEG VKAEEIFEKT GQVPDPTSTD NPEFQIVLSI IKEGLQVDPK KYHKMKERLV
201: GVSEETTTGV KRLYQMQQNG TLLFPAINVN DSVTKSKFDN LYGCRHSLPD GLMRATDVMI AGKVAVICGY GDVGKGCAAA MKTAGARVIV TEIDPICALQ
301: ALMEGLQVLT LEDVVSEADI FVTTTGNKDI IMVDHMRKMK NNAIVCNIGH FDNEIDMLGL ETYPGVKRIT IKPQTDRWVF PETKAGIIVL AEGRLMNLGC
401: ATGHPSFVMS CSFTNQVIAQ LELWNEKASG KYEKKVYVLP KHLDEKVALL HLGKLGARLT KLSKDQSDYV SIPIEGPYKP PHYRY

Arabidopsis Description

SAHH1Adenosylhomocysteinase 1 [Source:UniProtKB/Swiss-Prot;Acc:O23255]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.