Factsheet for PGSC0003DMT400011624

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
vacuole 1
peroxisome 1
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

cytosol: 22313117

msms PMID: 22313117 doi

S Lim, K Chisholm, RH Coffin, RD Peters, KI Al-Mughrabi, G Wang-Pruski, DM Pinto

Department of Plant and Animal Sciences, Nova Scotia Agricultural College, Truro, Nova Scotia, Canada.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g098500.1.1	Tomato	cytosol, extracellular, nucleus, plastid, unclear	99.38	99.38
KRH42750	Soybean	endoplasmic reticulum, nucleus	93.61	93.61
VIT_05s0029g00330.t01	Wine grape	cytosol	93.2	93.2
AT4G13940.1	Thale cress	cytosol	91.96	91.96
CDY47309	Canola	cytosol	91.96	91.77
Bra001921.1-P	Field mustard	cytosol	91.55	91.55
AT3G23810.1	Thale cress	cytosol	91.55	91.55
KXG28344	Sorghum	cytosol	91.55	91.55
CDY01177	Canola	cytosol, extracellular	91.55	91.55
CDX77483	Canola	cytosol	86.8	91.52
Zm00001d049239_P001	Maize	plasma membrane, plastid	91.34	91.34
KRH31567	Soybean	cytosol, mitochondrion	91.34	91.34
CDY50423	Canola	cytosol	91.34	91.34
Bra014984.1-P	Field mustard	cytosol	91.34	91.34
Bra032750.1-P	Field mustard	cytosol	91.34	91.34
Bra028345.1-P	Field mustard	cytosol	91.13	91.13
GSMUA_Achr9P01630_001	Banana	cytosol	79.79	91.06
TraesCS2B01G521600.2	Wheat	cytosol, golgi, plastid	90.31	90.31
GSMUA_Achr8P17490_001	Banana	cytosol, mitochondrion	72.58	90.26
GSMUA_Achr6P06530_001	Banana	cytosol	78.97	90.12
TraesCS2D01G493500.1	Wheat	cytosol	90.1	90.1
TraesCS2A01G493600.2	Wheat	cytosol, golgi, unclear	90.1	90.1
TraesCS2B01G517500.1	Wheat	cytosol, extracellular, golgi	89.69	89.69
KRH58847	Soybean	nucleus	92.99	89.66
TraesCS2D01G489900.1	Wheat	cytosol	89.48	89.48
TraesCS2A01G489600.2	Wheat	cytosol, golgi, unclear	89.28	89.28
CDX85127	Canola	cytosol	87.01	88.84
Zm00001d004646_P001	Maize	cytosol	42.68	88.84
Bra014002.1-P	Field mustard	cytosol	87.01	88.28
CDY58805	Canola	cytosol	86.19	88.0
CDY53211	Canola	cytosol	86.19	87.82
HORVU7Hr1G023890.1	Barley	cytosol	11.55	86.15
HORVU2Hr1G109370.1	Barley	cytosol, plastid	89.48	85.94
HORVU2Hr1G110120.3	Barley	cytosol, plastid	90.1	85.85
Os11t0455500-01	Rice	extracellular, plasma membrane	89.9	84.66
CDY18090	Canola	cytosol	87.63	83.66
CDY50106	Canola	cytosol	87.63	83.66
CDY67319	Canola	cytosol	28.45	75.0
HORVU1Hr1G064320.1	Barley	plastid	8.87	36.13

Protein Annotations

KEGG:00270+3.3.1.1	EntrezGene:102582199	Gene3D:3.40.50.1480	Gene3D:3.40.50.720	MapMan:7.3.2	ProteinID:ABB55380
ProteinID:ABB55380.1	InterPro:Adenosylhomocysteinase	InterPro:Adenosylhomocysteinase-like	InterPro:Ado_hCys_hydrolase_NAD-bd	EMBL:DQ252503	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0004013	GO:GO:0005488	GO:GO:0006139	GO:GO:0006730
GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016787	GO:GO:0019510
GO:GO:0051287	UniProt:M0ZZV7	HAMAP:MF_00563	InterPro:NAD(P)-bd_dom_sf	PFAM:PF00670	PFAM:PF05221
EnsemblPlantsGene:PGSC0003DMG400004572	PGSC:PGSC0003DMG400004572	EnsemblPlants:PGSC0003DMT400011624	PIRSF:PIRSF001109	ScanProsite:PS00739	PANTHER:PTHR23420
PANTHER:PTHR23420:SF12	InterPro:S-Ado-L-homoCys_hydrolase_CS	SMART:SM00996	SMART:SM00997	SUPFAM:SSF51735	SUPFAM:SSF52283
TIGRFAMs:TIGR00936	UniParc:UPI000294FA3F	RefSeq:XP_006349914.1	SEG:seg	:	:

Description

Adenosylhomocysteinase [Source:PGSC_GENE;Acc:PGSC0003DMG400004572]

Coordinates

chr12:+:59284562..59286935

Molecular Weight (calculated)

53248.4 Da

IEP (calculated)

5.993

GRAVY (calculated)

-0.129

Length

485 amino acids

Sequence
(BLAST)

001: MALIVEKTTS GREYKVKDMS QADFGRLEIE LAEVEMPGLM ACRTEFGPSQ PFKGAKITGS LHMTIQTAVL IETLTALGAE VRWCSCNIFS TQDHAAAATA
101: RDSAAVFAWK GETLQEYWWC TERALDWGPG GGPDLIVDDG GDATLLIHEG VKAEEEYAKT GKFPDPHSTD NVEFQLVLTI IKDGLKSDPL KYTKMKERLV
201: GVSEETTTGV KRLYQMQANG TLLFPAINVN DSVTKSKFDN LYGCRHSLPD GLMRATDVMI AGKVALIAGY GDVGKGCAAA MKQAGARVIV TEIDPICALQ
301: ATMEGLQVLP LEDVVSEIDI FVTTTGNKDI IMVDHMRKMK NNAIVCNIGH FDNEIDMLGL ETYPGVKRIT IKPQTDRWVF PDTKSGIIVL AEGRLMNLGC
401: ATGHPSFVMS CSFTNQVIAQ LELWKEKASG KYEKKVYVLP KHLDEKVAAL HLGQLGVKLT KLSKDQADYI SVPVEGPYKP AHYRY

Best Arabidopsis Sequence Match ( AT4G13940.1 )
(BLAST)

001: MALLVEKTSS GREYKVKDMS QADFGRLELE LAEVEMPGLM ACRTEFGPSQ PFKGARITGS LHMTIQTAVL IETLTALGAE VRWCSCNIFS TQDHAAAAIA
101: RDSAAVFAWK GETLQEYWWC TERALDWGPG GGPDLIVDDG GDATLLIHEG VKAEEIFEKT GQVPDPTSTD NPEFQIVLSI IKEGLQVDPK KYHKMKERLV
201: GVSEETTTGV KRLYQMQQNG TLLFPAINVN DSVTKSKFDN LYGCRHSLPD GLMRATDVMI AGKVAVICGY GDVGKGCAAA MKTAGARVIV TEIDPICALQ
301: ALMEGLQVLT LEDVVSEADI FVTTTGNKDI IMVDHMRKMK NNAIVCNIGH FDNEIDMLGL ETYPGVKRIT IKPQTDRWVF PETKAGIIVL AEGRLMNLGC
401: ATGHPSFVMS CSFTNQVIAQ LELWNEKASG KYEKKVYVLP KHLDEKVALL HLGKLGARLT KLSKDQSDYV SIPIEGPYKP PHYRY

Arabidopsis Description

SAHH1Adenosylhomocysteinase 1 [Source:UniProtKB/Swiss-Prot;Acc:O23255]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.