Factsheet for Solyc08g016750.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10
mitochondrion 1

Predictors

GFP

MS/MS

Papers

plastid: 22908117
unclear: 26455813
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 26455813 doi

P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff

Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc03g116320.2.1
Solyc03g118540.2.1
Solyc05g005580.2.1
Solyc06g063290.2.1
Solyc06g068930.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G30120.1	Solyc05g005580.2.1	AT1G70340.1	21798944
AT1G30120.1	Solyc03g118540.2.1	AT3G17860.1	21798944
AT1G30120.1	Solyc06g068930.1.1	AT3G17860.1	21798944
AT1G30120.1	Solyc06g063290.2.1	AT3G21140.1	21798944
AT1G30120.1	Solyc03g116320.2.1	AT3G47620.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400019358	Potato	plastid	99.02	96.88
Solyc04g008590.2.1	Tomato	plastid	96.08	96.08
CDX90227	Canola	cytosol, mitochondrion, peroxisome	42.89	94.09
Bra032361.1-P	Field mustard	cytosol, mitochondrion, peroxisome	70.59	93.81
Zm00001d000227_P001	Maize	cytosol	69.61	89.03
Os03t0645100-01	Rice	plastid	70.34	87.77
CDY54115	Canola	mitochondrion, peroxisome, plastid	12.5	83.61
KRH58644	Soybean	nucleus	81.13	81.73
AT2G34590.1	Thale cress	plastid	80.39	80.79
VIT_04s0043g00720.t01	Wine grape	plastid	80.15	80.74
KRH42550	Soybean	plastid	79.17	79.56
CDY63670	Canola	plastid	78.43	79.4
KRH15497	Soybean	plastid	78.43	79.01
KRH05520	Soybean	plastid	77.94	78.91
CDY51472	Canola	plastid	70.1	78.36
Bra010796.1-P	Field mustard	plastid	76.96	77.92
GSMUA_Achr5P02560_001	Banana	plastid	70.34	77.36
AT1G30120.1	Thale cress	plastid	76.96	77.34
Zm00001d033225_P002	Maize	plastid	72.06	76.76
EER93752	Sorghum	plastid	72.79	76.74
TraesCS5D01G384100.1	Wheat	golgi	73.04	75.83
TraesCS5A01G374500.1	Wheat	plastid	72.79	75.57
TraesCS5B01G376400.1	Wheat	plastid	72.55	75.32
EES16391	Sorghum	plastid	73.28	74.94
Os12t0616900-01	Rice	plastid	71.57	74.68
TraesCS5A01G030800.1	Wheat	plastid	69.85	72.89
TraesCS5B01G030400.1	Wheat	plastid	70.1	72.77
HORVU0Hr1G009910.2	Barley	plastid	70.1	72.59
GSMUA_Achr4P31470_001	Banana	mitochondrion	45.83	71.65
CDY54117	Canola	cytosol	20.34	71.55
TraesCS5D01G039000.1	Wheat	plastid	70.1	70.62
GSMUA_Achr2P12960_001	Banana	vacuole	10.54	69.35
CDY26291	Canola	plastid	52.94	68.57
HORVU5Hr1G092920.4	Barley	plastid	73.53	64.52
CDX90228	Canola	plastid	15.69	48.12
CDY54116	Canola	cytosol	4.41	45.0
Solyc03g097680.2.1	Tomato	plastid	35.05	38.75
Solyc06g072580.2.1	Tomato	nucleus	34.8	38.69
Solyc05g024160.2.1	Tomato	mitochondrion	34.31	37.74
Solyc01g028900.2.1	Tomato	plastid	26.96	30.73

Protein Annotations

Gene3D:3.40.50.920	Gene3D:3.40.50.970	MapMan:5.1.2.2.1.2	GO:GO:0003674	GO:GO:0003824	GO:GO:0008150
GO:GO:0008152	InterPro:IPR009014	UniProt:K4CJJ4	PFAM:PF02779	PFAM:PF02780	PANTHER:PTHR11624
PANTHER:PTHR11624:SF95	SMART:SM00861	SUPFAM:SSF52518	SUPFAM:SSF52922	EnsemblPlantsGene:Solyc08g016750.2	EnsemblPlants:Solyc08g016750.2.1
InterPro:THDP-binding	InterPro:Transketo_C/PFOR_II	InterPro:Transketolase-like_Pyr-bd	InterPro:Transketolase_C	UniParc:UPI000276B889	SEG:seg

Description

Pyruvate dehydrogenase E1 component subunit beta [Source:UniProtKB/TrEMBL;Acc:K4CJJ4]

Coordinates

chr8:-:9124887..9134407

Molecular Weight (calculated)

44331.5 Da

IEP (calculated)

6.788

GRAVY (calculated)

-0.102

Length

408 amino acids

Sequence
(BLAST)

001: MAAIIQGIGA ATALTSANSL DTKKSLFANS RRSLSERKGR LFVARSDGRL SSGLNGRGGR AEQLITNAVA AKEDAAAAST SFKPGHELLL FEALREGLEE
101: EMDRDPTVCV MGEDVGHYGG SYKVTKGLAP KYGDLRVLDT PIAENSFTGM GIGAAMTGLR PVIEGMNMGF LLLAFNQISN NCGMLHYTSG GQFKIPVVIR
201: GPGGVGRQLG AEHSQRLESY FQSIPGIQMV ACSTPYNAKG LMKAAIKSDN PVILFEHVLL YNLKERIPDE EYVLNLEEAE MVRPGEHVTI LTYSRMRYHV
301: MQAAKTLVNK GYDPEVIDIR SLKPFDLYTI GKSVKKTHRV LIVEECMRTG GIGASLTAAI TENFHDYLDA PIVCLSSQDV PTPYAGTLEN WTVVQPPQIV
401: TAVEQLCQ

Best Arabidopsis Sequence Match ( AT2G34590.1 )
(BLAST)

001: MSAILQGAGA ATALSPFNSI DSNKLVAPSR SSLSVRSKRY IVAGSDSKSF GSSLVARRSE PLIPNAVTTK ADTAASSTSS KPGHELLLFE ALQEGLEEEM
101: DRDPHVCVMG EDVGHYGGSY KVTKGLADKF GDLRVLDTPI CENAFTGMGI GAAMTGLRPV IEGMNMGFLL LAFNQISNNC GMLHYTSGGQ FTIPVVIRGP
201: GGVGRQLGAE HSQRLESYFQ SIPGIQMVAC STPYNAKGLM KAAIRSENPV ILFEHVLLYN LKESIPDEEY ICNLEEAEMV RPGEHITILT YSRMRYHVMQ
301: AAKTLVNKGY DPEVIDIRSL KPFDLYTIGN SVKKTHRVLI VEECMRTGGI GASLTAAINE NFHDYLDAPV MCLSSQDVPT PYAGTLEEWT VVQPAQIVTA
401: VEQLCQ

Arabidopsis Description

E1-BETA-2Pyruvate dehydrogenase E1 component subunit beta-3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O64688]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.