Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- mitochondrion 1
- plastid 8
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra032361.1-P | Field mustard | cytosol, mitochondrion, peroxisome | 74.63 | 98.7 |
| CDX90227 | Canola | cytosol, mitochondrion, peroxisome | 44.83 | 97.85 |
| Zm00001d000227_P001 | Maize | cytosol | 70.2 | 89.34 |
| Os03t0645100-01 | Rice | plastid | 70.44 | 87.46 |
| CDY63670 | Canola | plastid | 84.24 | 84.86 |
| Bra010796.1-P | Field mustard | plastid | 81.28 | 81.89 |
| VIT_10s0003g03770.t01 | Wine grape | plastid | 78.33 | 81.33 |
| AT2G34590.1 | Thale cress | plastid | 81.03 | 81.03 |
| CDY51472 | Canola | plastid | 71.67 | 79.73 |
| KRH05520 | Soybean | plastid | 78.08 | 78.66 |
| KRH15497 | Soybean | plastid | 78.08 | 78.27 |
| Solyc04g008590.2.1 | Tomato | plastid | 78.08 | 77.7 |
| KRH58644 | Soybean | nucleus | 77.09 | 77.28 |
| Solyc08g016750.2.1 | Tomato | plastid | 77.34 | 76.96 |
| EER93752 | Sorghum | plastid | 73.15 | 76.74 |
| Zm00001d033225_P002 | Maize | plastid | 72.17 | 76.5 |
| KRH42550 | Soybean | plastid | 76.35 | 76.35 |
| Os12t0616900-01 | Rice | plastid | 72.91 | 75.7 |
| TraesCS5D01G384100.1 | Wheat | golgi | 73.15 | 75.57 |
| TraesCS5A01G374500.1 | Wheat | plastid | 73.15 | 75.57 |
| TraesCS5B01G376400.1 | Wheat | plastid | 72.91 | 75.32 |
| PGSC0003DMT400019358 | Potato | plastid | 77.34 | 75.3 |
| EES16391 | Sorghum | plastid | 72.66 | 73.93 |
| GSMUA_Achr5P02560_001 | Banana | plastid | 67.0 | 73.32 |
| TraesCS5A01G030800.1 | Wheat | plastid | 69.46 | 72.12 |
| TraesCS5B01G030400.1 | Wheat | plastid | 69.7 | 72.01 |
| PGSC0003DMT400080554 | Potato | plastid | 77.09 | 71.79 |
| HORVU0Hr1G009910.2 | Barley | plastid | 69.46 | 71.57 |
| GSMUA_Achr2P12960_001 | Banana | vacuole | 10.84 | 70.97 |
| CDY26291 | Canola | plastid | 54.93 | 70.79 |
| GSMUA_Achr4P31470_001 | Banana | mitochondrion | 44.83 | 69.73 |
| TraesCS5D01G039000.1 | Wheat | plastid | 69.21 | 69.38 |
| HORVU5Hr1G092920.4 | Barley | plastid | 72.17 | 63.01 |
| CDX90228 | Canola | plastid | 15.27 | 46.62 |
| AT5G50850.1 | Thale cress | mitochondrion | 34.48 | 38.57 |
| AT1G55510.1 | Thale cress | mitochondrion | 28.33 | 32.67 |
| AT3G13450.1 | Thale cress | mitochondrion | 27.09 | 30.73 |
Protein Annotations
| Gene3D:3.40.50.920 | Gene3D:3.40.50.970 | MapMan:5.1.2.2.1.2 | EntrezGene:839891 | ProteinID:AAG50862.1 | ProteinID:AEE31181.1 |
| EMBL:AF361583 | EMBL:AK221898 | ArrayExpress:AT1G30120 | EnsemblPlantsGene:AT1G30120 | RefSeq:AT1G30120 | TAIR:AT1G30120 |
| RefSeq:AT1G30120-TAIR-G | EnsemblPlants:AT1G30120.1 | TAIR:AT1G30120.1 | EMBL:AY087733 | EMBL:AY093988 | Unigene:At.10483 |
| GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004739 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005975 | GO:GO:0006091 | GO:GO:0006096 | GO:GO:0006139 | GO:GO:0006629 |
| GO:GO:0006633 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009056 | GO:GO:0009058 | GO:GO:0009507 |
| GO:GO:0009536 | GO:GO:0009570 | GO:GO:0009941 | GO:GO:0009987 | GO:GO:0010240 | GO:GO:0016491 |
| GO:GO:0055114 | InterPro:IPR009014 | RefSeq:NP_174304.1 | Symbol:PDH-E1 BETA | PFAM:PF02779 | PFAM:PF02780 |
| PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001016 | PO:PO:0001017 |
| PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 |
| PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 |
| PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 |
| PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 |
| PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 |
| PO:PO:0025022 | PO:PO:0025281 | PANTHER:PTHR11624 | PANTHER:PTHR11624:SF95 | UniProt:Q9C6Z3 | SMART:SM00861 |
| SUPFAM:SSF52518 | SUPFAM:SSF52922 | InterPro:THDP-binding | InterPro:Transketo_C/PFOR_II | InterPro:Transketolase-like_Pyr-bd | InterPro:Transketolase_C |
| EMBL:U80186 | UniParc:UPI00000A9A07 | SEG:seg | : | : | : |
Description
PDH-E1 BETAPyruvate dehydrogenase E1 component subunit beta-2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9C6Z3]
Coordinates
chr1:-:10584105..10586680
Molecular Weight (calculated)
44247.3 Da
IEP (calculated)
6.319
GRAVY (calculated)
-0.093
Length
406 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSIIHGAGA ATTTLSTFNS VDSKKLFVAP SRTNLSVRSQ RYIVAGSDAS KKSFGSGLRV RHSQKLIPNA VATKEADTSA STGHELLLFE ALQEGLEEEM
101: DRDPHVCVMG EDVGHYGGSY KVTKGLADKF GDLRVLDTPI CENAFTGMGI GAAMTGLRPV IEGMNMGFLL LAFNQISNNC GMLHYTSGGQ FTIPVVIRGP
201: GGVGRQLGAE HSQRLESYFQ SIPGIQMVAC STPYNAKGLM KAAIRSENPV ILFEHVLLYN LKEKIPDEDY VCNLEEAEMV RPGEHITILT YSRMRYHVMQ
301: AAKTLVNKGY DPEVIDIRSL KPFDLHTIGN SVKKTHRVLI VEECMRTGGI GASLTAAINE NFHDYLDAPV MCLSSQDVPT PYAGTLEEWT VVQPAQIVTA
401: VEQLCQ
101: DRDPHVCVMG EDVGHYGGSY KVTKGLADKF GDLRVLDTPI CENAFTGMGI GAAMTGLRPV IEGMNMGFLL LAFNQISNNC GMLHYTSGGQ FTIPVVIRGP
201: GGVGRQLGAE HSQRLESYFQ SIPGIQMVAC STPYNAKGLM KAAIRSENPV ILFEHVLLYN LKEKIPDEDY VCNLEEAEMV RPGEHITILT YSRMRYHVMQ
301: AAKTLVNKGY DPEVIDIRSL KPFDLHTIGN SVKKTHRVLI VEECMRTGGI GASLTAAINE NFHDYLDAPV MCLSSQDVPT PYAGTLEEWT VVQPAQIVTA
401: VEQLCQ
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.