Factsheet for Bra032361.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, peroxisome, mitochondrion

Predictor Summary:

cytosol 2
mitochondrion 3
peroxisome 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra001814.1-P
Bra018126.1-P
Bra022254.1-P
Bra023902.1-P
Bra031254.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G30120.1	Bra022254.1-P	AT3G17860.1	21798944
AT1G30120.1	Bra001814.1-P	AT3G21140.1	21798944
AT1G30120.1	Bra023902.1-P	AT3G21140.1	21798944
AT1G30120.1	Bra031254.1-P	AT3G21140.1	21798944
AT1G30120.1	Bra018126.1-P	AT3G47620.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d000227_P001	Maize	cytosol	90.23	86.83
Os03t0645100-01	Rice	plastid	88.6	83.18
Bra010796.1-P	Field mustard	plastid	99.67	75.93
AT1G30120.1	Thale cress	plastid	98.7	74.63
VIT_10s0003g03770.t01	Wine grape	plastid	94.14	73.91
KRH05520	Soybean	plastid	93.81	71.46
KRH15497	Soybean	plastid	94.14	71.36
Zm00001d033225_P002	Maize	plastid	88.93	71.28
KRH58644	Soybean	nucleus	93.81	71.11
GSMUA_Achr2P12960_001	Banana	vacuole	14.33	70.97
KRH42550	Soybean	plastid	93.81	70.94
Solyc04g008590.2.1	Tomato	plastid	94.14	70.83
Solyc08g016750.2.1	Tomato	plastid	93.81	70.59
EER93752	Sorghum	plastid	88.93	70.54
Os12t0616900-01	Rice	plastid	88.93	69.82
TraesCS5D01G384100.1	Wheat	golgi	88.93	69.47
TraesCS5A01G374500.1	Wheat	plastid	88.93	69.47
PGSC0003DMT400019358	Potato	plastid	94.14	69.3
TraesCS5B01G376400.1	Wheat	plastid	88.6	69.21
EES16391	Sorghum	plastid	89.9	69.17
GSMUA_Achr4P31470_001	Banana	mitochondrion	58.31	68.58
GSMUA_Achr5P02560_001	Banana	plastid	81.43	67.39
TraesCS5A01G030800.1	Wheat	plastid	85.67	67.26
TraesCS5B01G030400.1	Wheat	plastid	85.67	66.92
HORVU0Hr1G009910.2	Barley	plastid	85.34	66.5
PGSC0003DMT400080554	Potato	plastid	94.14	66.28
TraesCS5D01G039000.1	Wheat	plastid	85.67	64.94
CDY26291	Canola	plastid	66.12	64.44
HORVU5Hr1G092920.4	Barley	plastid	89.25	58.92
Bra026451.1-P	Field mustard	mitochondrion	40.07	35.65
Bra022757.1-P	Field mustard	mitochondrion	42.02	35.15
Bra022529.1-P	Field mustard	mitochondrion	41.69	34.97
Bra035715.1-P	Field mustard	mitochondrion	41.37	28.04
Bra030856.1-P	Field mustard	mitochondrion	33.88	27.44

Protein Annotations

Gene3D:3.40.50.920	Gene3D:3.40.50.970	MapMan:5.1.2.2.1.2	EnsemblPlantsGene:Bra032361	EnsemblPlants:Bra032361.1	EnsemblPlants:Bra032361.1-P
GO:GO:0003674	GO:GO:0003824	GO:GO:0008150	GO:GO:0008152	InterPro:IPR009014	UniProt:M4EU79
PFAM:PF02779	PFAM:PF02780	PANTHER:PTHR11624	PANTHER:PTHR11624:SF95	SMART:SM00861	SUPFAM:SSF52518
SUPFAM:SSF52922	InterPro:THDP-binding	InterPro:Transketo_C/PFOR_II	InterPro:Transketolase-like_Pyr-bd	InterPro:Transketolase_C	UniParc:UPI00025425CA
SEG:seg	:	:	:	:	:

Description

AT2G34590 (E=3e-169) | transketolase family protein

Coordinates

chrA09:+:22184009..22184932

Molecular Weight (calculated)

33823.1 Da

IEP (calculated)

5.573

GRAVY (calculated)

-0.026

Length

307 amino acids

Sequence
(BLAST)

001: MDRDPHVCVM GEDVGHYGGS YKVTKGLADK FGDLRVLDTP ICENAFTGMG IGAAMTGLRP VIEGMNMGFL LLAFNQISNN CGMLHYTSGG QFTIPVVIRG
101: PGGVGRQLGA EHSQRLESYF QSIPGIQMVA CSTPYNAKGL MKAAIRSENP VILFEHVLLY NLKEKIPDEE YICNLEEAEM VRPGEHITIL TYSRMRYHVM
201: QAAKILVNKG YDPEVIDIRS LKPFDLYTIG NSVKKTHRVL IVEECMRTGG IGASLTAAIN ENFHDYLDAP VMCLSSQDVP TPYAGTLEEW TVVQPAQIVT
301: AVEQLCQ

Best Arabidopsis Sequence Match ( AT2G34590.1 )
(BLAST)

001: MSAILQGAGA ATALSPFNSI DSNKLVAPSR SSLSVRSKRY IVAGSDSKSF GSSLVARRSE PLIPNAVTTK ADTAASSTSS KPGHELLLFE ALQEGLEEEM
101: DRDPHVCVMG EDVGHYGGSY KVTKGLADKF GDLRVLDTPI CENAFTGMGI GAAMTGLRPV IEGMNMGFLL LAFNQISNNC GMLHYTSGGQ FTIPVVIRGP
201: GGVGRQLGAE HSQRLESYFQ SIPGIQMVAC STPYNAKGLM KAAIRSENPV ILFEHVLLYN LKESIPDEEY ICNLEEAEMV RPGEHITILT YSRMRYHVMQ
301: AAKTLVNKGY DPEVIDIRSL KPFDLYTIGN SVKKTHRVLI VEECMRTGGI GASLTAAINE NFHDYLDAPV MCLSSQDVPT PYAGTLEEWT VVQPAQIVTA
401: VEQLCQ

Arabidopsis Description

E1-BETA-2Pyruvate dehydrogenase E1 component subunit beta-3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O64688]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.