Factsheet for PGSC0003DMT400080554

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

mitochondrion 2
plastid 9

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400001613
PGSC0003DMT400036790
PGSC0003DMT400068172
PGSC0003DMT400068174
PGSC0003DMT400074101
PGSC0003DMT400079598

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G30120.1	PGSC0003DMT400079598	AT1G70340.1	21798944
AT1G30120.1	PGSC0003DMT400036790	AT3G17860.1	21798944
AT1G30120.1	PGSC0003DMT400074101	AT3G17860.1	21798944
AT1G30120.1	PGSC0003DMT400068172	AT3G21140.1	21798944
AT1G30120.1	PGSC0003DMT400068174	AT3G21140.1	21798944
AT1G30120.1	PGSC0003DMT400001613	AT3G47620.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX90227	Canola	cytosol, mitochondrion, peroxisome	40.6	95.16
Bra032361.1-P	Field mustard	cytosol, mitochondrion, peroxisome	66.28	94.14
Zm00001d000227_P001	Maize	cytosol	65.6	89.66
Os03t0645100-01	Rice	plastid	66.28	88.38
CDY54115	Canola	mitochondrion, peroxisome, plastid	11.7	83.61
VIT_04s0043g00720.t01	Wine grape	plastid	75.69	81.48
KRH15497	Soybean	plastid	75.23	80.99
KRH42550	Soybean	plastid	74.54	80.05
Solyc04g008590.2.1	Tomato	plastid	74.77	79.9
KRH05520	Soybean	plastid	72.25	78.16
KRH58644	Soybean	nucleus	72.48	78.02
AT2G34590.1	Thale cress	plastid	72.48	77.83
Bra010796.1-P	Field mustard	plastid	71.79	77.67
CDY63670	Canola	plastid	71.56	77.42
Zm00001d033225_P002	Maize	plastid	67.89	77.28
PGSC0003DMT400019358	Potato	plastid	73.85	77.22
AT1G30120.1	Thale cress	plastid	71.79	77.09
EER93752	Sorghum	plastid	67.89	76.49
CDY51472	Canola	plastid	63.76	76.16
Os12t0616900-01	Rice	plastid	68.12	75.96
TraesCS5D01G384100.1	Wheat	golgi	67.89	75.32
EES16391	Sorghum	plastid	68.81	75.19
TraesCS5B01G376400.1	Wheat	plastid	67.66	75.06
TraesCS5A01G374500.1	Wheat	plastid	67.66	75.06
GSMUA_Achr5P02560_001	Banana	plastid	63.3	74.39
GSMUA_Achr2P12960_001	Banana	vacuole	10.32	72.58
TraesCS5A01G030800.1	Wheat	plastid	64.45	71.87
TraesCS5B01G030400.1	Wheat	plastid	64.45	71.5
HORVU0Hr1G009910.2	Barley	plastid	64.45	71.32
GSMUA_Achr4P31470_001	Banana	mitochondrion	42.66	71.26
TraesCS5D01G039000.1	Wheat	plastid	64.68	69.63
CDY54117	Canola	cytosol	18.35	68.97
CDY26291	Canola	plastid	48.85	67.62
HORVU5Hr1G092920.4	Barley	plastid	68.12	63.87
CDY54116	Canola	cytosol	4.13	45.0
CDX90228	Canola	plastid	12.16	39.85
PGSC0003DMT400011072	Potato	mitochondrion	32.34	38.21
PGSC0003DMT400065364	Potato	mitochondrion	31.42	36.83
PGSC0003DMT400069263	Potato	mitochondrion	31.42	35.68

Protein Annotations

EntrezGene:102588815	Gene3D:3.40.50.920	Gene3D:3.40.50.970	MapMan:5.1.2.2.1.2	GO:GO:0003674	GO:GO:0003824
GO:GO:0008150	GO:GO:0008152	InterPro:IPR009014	UniProt:M1D3N5	PFAM:PF02779	PFAM:PF02780
EnsemblPlantsGene:PGSC0003DMG400031370	PGSC:PGSC0003DMG400031370	EnsemblPlants:PGSC0003DMT400080554	PANTHER:PTHR11624	PANTHER:PTHR11624:SF95	SMART:SM00861
SUPFAM:SSF52518	SUPFAM:SSF52922	InterPro:THDP-binding	InterPro:Transketo_C/PFOR_II	InterPro:Transketolase-like_Pyr-bd	InterPro:Transketolase_C
UniParc:UPI000295528B	SEG:seg	:	:	:	:

Description

Pyruvate dehydrogenase E1 beta subunit [Source:PGSC_GENE;Acc:PGSC0003DMG400031370]

Coordinates

chr4:+:3591452..3595890

Molecular Weight (calculated)

48020.1 Da

IEP (calculated)

8.334

GRAVY (calculated)

-0.140

Length

436 amino acids

Sequence
(BLAST)

001: MAAIIQGIGA ATALTSANSL DTKKSFFSNS RRSLSVGAER KGRTFVVRSD GRLSYGLNGR GGRAEQLITN AVARSYRPAN RRRTTTVIFY QERYAIFNPG
101: IELAGYLMKK LGRHELLLFE ALREGLEEEM DRDPAVCVMG EDVGHYGGSY KVTKGLAPKY GDLRVLDTPI AENSFTGMGI GAAMTGLRPV IEGMNMGFLL
201: LAFNQISNNC GMLHYTSGGQ FKIPVVIRGP GGVGRQLGAE HSQRLESYFQ SIPGIQMVAC STPYNAKGLM KAAIRSDNPV ILFEHVLLYN LKERIPDEEY
301: VLNLEEAEMV RPGEHVTILT YSRMRYHVMQ AAKTLVNKGY DPEVIDIRSL KPFDLHTIGN SVKKTHRVLI VEECMRTGGI GASLTAAITE NFHDYLDSPI
401: ICLSSQDVPT PYAGTLENWT VVQPAQIVTA VEQLCQ

Best Arabidopsis Sequence Match ( AT2G34590.1 )
(BLAST)

001: MSAILQGAGA ATALSPFNSI DSNKLVAPSR SSLSVRSKRY IVAGSDSKSF GSSLVARRSE PLIPNAVTTK ADTAASSTSS KPGHELLLFE ALQEGLEEEM
101: DRDPHVCVMG EDVGHYGGSY KVTKGLADKF GDLRVLDTPI CENAFTGMGI GAAMTGLRPV IEGMNMGFLL LAFNQISNNC GMLHYTSGGQ FTIPVVIRGP
201: GGVGRQLGAE HSQRLESYFQ SIPGIQMVAC STPYNAKGLM KAAIRSENPV ILFEHVLLYN LKESIPDEEY ICNLEEAEMV RPGEHITILT YSRMRYHVMQ
301: AAKTLVNKGY DPEVIDIRSL KPFDLYTIGN SVKKTHRVLI VEECMRTGGI GASLTAAINE NFHDYLDAPV MCLSSQDVPT PYAGTLEEWT VVQPAQIVTA
401: VEQLCQ

Arabidopsis Description

E1-BETA-2Pyruvate dehydrogenase E1 component subunit beta-3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O64688]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.