Factsheet for PGSC0003DMT400069263

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
mitochondrion 8
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion, plastid, secretory
BaCelLo:	secretory
EpiLoc:	mitochondrion
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
Plant-mPloc:	mitochondrion
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	mitochondrion

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400004851
PGSC0003DMT400058223

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G50850.1	PGSC0003DMT400004851	AT1G59900.1	21798944
AT5G50850.1	PGSC0003DMT400058223	AT1G59900.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g072580.2.1	Tomato	nucleus	88.54	92.64
PGSC0003DMT400011072	Potato	mitochondrion	83.33	86.72
KRH73802	Soybean	mitochondrion	78.12	83.33
KRH16935	Soybean	mitochondrion	77.86	83.06
KRH14338	Soybean	mitochondrion	77.86	83.06
TraesCS7D01G263900.2	Wheat	mitochondrion	78.65	82.51
TraesCS7B01G161100.1	Wheat	mitochondrion	78.65	81.84
HORVU7Hr1G055090.3	Barley	mitochondrion	78.65	81.62
TraesCS7A01G263300.1	Wheat	plastid	78.39	81.57
CDY05827	Canola	mitochondrion	77.08	81.32
AT5G50850.1	Thale cress	mitochondrion	76.56	80.99
CDX84881	Canola	mitochondrion	77.08	80.65
CDY16348	Canola	mitochondrion	76.82	80.6
CDX91560	Canola	mitochondrion	76.82	80.6
TraesCS5D01G299000.1	Wheat	mitochondrion	78.91	80.59
TraesCS5B01G290600.1	Wheat	mitochondrion	78.91	80.59
TraesCS5A01G291500.1	Wheat	golgi	78.91	80.59
CDX71636	Canola	mitochondrion	76.3	80.49
Os08t0536000-01	Rice	mitochondrion	78.12	80.21
VIT_17s0000g00690.t01	Wine grape	mitochondrion	74.74	80.17
CDY45814	Canola	mitochondrion	76.56	80.11
Bra026451.1-P	Field mustard	mitochondrion	71.88	80.0
Zm00001d006107_P001	Maize	mitochondrion	77.86	79.95
Bra022529.1-P	Field mustard	mitochondrion	76.04	79.78
EER97019	Sorghum	mitochondrion	77.86	79.73
Bra022757.1-P	Field mustard	mitochondrion	76.04	79.56
KXG25507	Sorghum	mitochondrion	77.08	79.14
Os09t0509200-01	Rice	mitochondrion	76.82	78.46
GSMUA_Achr8P09180_001	Banana	extracellular, mitochondrion, peroxisome	42.97	76.04
PGSC0003DMT400065364	Potato	mitochondrion	73.44	75.81
Zm00001d031659_P001	Maize	mitochondrion	76.82	74.31
Zm00001d021070_P002	Maize	mitochondrion	76.56	71.53
GSMUA_Achr5P25000_001	Banana	mitochondrion, plastid	77.08	71.5
HORVU5Hr1G077200.2	Barley	mitochondrion, plastid	78.91	70.3
Bra035715.1-P	Field mustard	mitochondrion	75.26	63.8
PGSC0003DMT400019358	Potato	plastid	36.72	33.81
PGSC0003DMT400080554	Potato	plastid	35.68	31.42

Protein Annotations

KEGG:00010+1.2.4.1	KEGG:00020+1.2.4.1	KEGG:00620+1.2.4.1	MapMan:2.2.1.1.2	Gene3D:3.40.50.920	Gene3D:3.40.50.970
GO:GO:0003674	GO:GO:0003824	GO:GO:0004739	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005739	GO:GO:0005759	GO:GO:0005975	GO:GO:0006086	GO:GO:0006091
GO:GO:0006096	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009058
GO:GO:0009987	GO:GO:0016491	GO:GO:0055114	InterPro:IPR009014	UniProt:M1CK72	InterPro:PDHB
PFAM:PF02779	PFAM:PF02780	EnsemblPlantsGene:PGSC0003DMG400026943	PGSC:PGSC0003DMG400026943	EnsemblPlants:PGSC0003DMT400069263	PANTHER:PTHR11624
PANTHER:PTHR11624:SF94	SMART:SM00861	SUPFAM:SSF52518	SUPFAM:SSF52922	InterPro:THDP-binding	InterPro:Transketo_C/PFOR_II
InterPro:Transketolase-like_Pyr-bd	InterPro:Transketolase_C	UniParc:UPI0002964C27	SEG:seg	:	:

Description

Pyruvate dehydrogenase [Source:PGSC_GENE;Acc:PGSC0003DMG400026943]

Coordinates

chr6:-:53322772..53330616

Molecular Weight (calculated)

41721.2 Da

IEP (calculated)

6.074

GRAVY (calculated)

0.066

Length

384 amino acids

Sequence
(BLAST)

001: MVNLDLRLQN KFLVGSRVFA SRTYSSAVKE MTVRDALNSA LDEEMSADPK VFVMGEEVGE YQGAYKITKG LLTKYGPQRV IDTPITEAGF TGIGVGAAYH
101: GLRPVIEFMT FNFSMQAIDH IINSAAKSNY MSAGQISVPI VFRGPNGAAA GVGAQHSQCY AAWYSACPGL KVLTPYSSED ARGLLKAAIR DPDPVVFLEN
201: ELLYGESFPI SAEALDSSFS LPIGKAKIEH EGKDVTITAF SKMVGYALKA AEILAKEGIS AEVINLRSIR PLDRPAINAS VRKTNRLVTV EEGFPQHGVG
301: AEIWLLSSNS LRTNLSCFVI LFLFVCSPSA SVVEESFEYL DAPIERITGA DVPMPYAANL ERLAVPQVED IVRAVKRVCY RSSK

Best Arabidopsis Sequence Match ( AT5G50850.1 )
(BLAST)

001: MLGILRQRAI DGASTLRRTR FALVSARSYA AGAKEMTVRD ALNSAIDEEM SADPKVFVMG EEVGQYQGAY KITKGLLEKY GPERVYDTPI TEAGFTGIGV
101: GAAYAGLKPV VEFMTFNFSM QAIDHIINSA AKSNYMSAGQ INVPIVFRGP NGAAAGVGAQ HSQCYAAWYA SVPGLKVLAP YSAEDARGLL KAAIRDPDPV
201: VFLENELLYG ESFPISEEAL DSSFCLPIGK AKIEREGKDV TIVTFSKMVG FALKAAEKLA EEGISAEVIN LRSIRPLDRA TINASVRKTS RLVTVEEGFP
301: QHGVCAEICA SVVEESFSYL DAPVERIAGA DVPMPYAANL ERLALPQIED IVRASKRACY RSK

Arabidopsis Description

PDH2Pyruvate dehydrogenase E1 component subunit beta [Source:UniProtKB/TrEMBL;Acc:A0A178UM82]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.