Factsheet for PGSC0003DMT400058223

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 8
plastid 3

Predictors

GFP

MS/MS

Papers

mitochondrion: 14983062

msms PMID: 14983062 doi

Y Balmer, WH Vensel, CK Tanaka, WJ Hurkman, E Gelhaye, N Rouhier, JP Jacquot, W Manieri, P Schürmann, M Droux, BB Buchanan

Department of Plant and Microbial Biology, University of California, 111 Koshland Hall, Berkeley, CA 94720, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g006520.2.1	Tomato	plastid	98.98	98.98
PGSC0003DMT400004851	Potato	mitochondrion	86.7	87.37
GSMUA_Achr7P05520_001	Banana	cytosol, mitochondrion	63.43	85.22
GSMUA_Achr1P18330_001	Banana	cytosol, mitochondrion	70.59	85.19
TraesCS6A01G311800.1	Wheat	golgi	79.03	83.29
CDY31596	Canola	mitochondrion	14.07	82.09
KRH69435	Soybean	mitochondrion	82.86	81.82
Bra035416.1-P	Field mustard	mitochondrion	81.07	81.49
CDY24500	Canola	mitochondrion	81.07	81.49
CDY33613	Canola	mitochondrion	80.56	80.98
TraesCS6D01G291100.1	Wheat	mitochondrion	80.05	80.67
TraesCS6B01G342000.1	Wheat	mitochondrion	80.05	80.67
Os02t0739600-01	Rice	mitochondrion	80.05	80.26
AT1G59900.1	Thale cress	mitochondrion	79.8	80.21
KRH45768	Soybean	mitochondrion	80.56	79.95
KRH74712	Soybean	mitochondrion	74.68	79.78
KRG99219	Soybean	mitochondrion	69.82	79.36
CDY70124	Canola	cytosol	29.41	79.31
Zm00001d017985_P001	Maize	mitochondrion	79.03	79.23
EES05555	Sorghum	mitochondrion	79.03	79.23
VIT_09s0018g01940.t01	Wine grape	mitochondrion, plastid	80.05	78.64
VIT_01s0026g00990.t01	Wine grape	mitochondrion, plastid	80.05	78.64
CDY38784	Canola	mitochondrion	78.52	78.32
Zm00001d052289_P001	Maize	mitochondrion	77.75	77.95
CDY11622	Canola	mitochondrion	77.75	77.55
HORVU6Hr1G076810.1	Barley	plastid	80.05	77.48
CDY16236	Canola	mitochondrion	76.21	77.0
Bra024643.1-P	Field mustard	mitochondrion	75.96	76.74
AT1G24180.1	Thale cress	mitochondrion	76.47	76.08
Bra016238.1-P	Field mustard	mitochondrion	77.49	75.75
CDY28458	Canola	mitochondrion	75.96	75.19
Bra012418.1-P	Field mustard	mitochondrion	75.96	75.0
CDY40292	Canola	mitochondrion	75.7	74.94
EER88157	Sorghum	mitochondrion	75.19	74.43
TraesCS7A01G238900.1	Wheat	mitochondrion	74.42	74.42
TraesCS7D01G199900.1	Wheat	golgi	74.94	74.37
Zm00001d044748_P002	Maize	mitochondrion	74.17	73.98
Os06t0246500-01	Rice	plastid	74.68	73.37
TraesCS7B01G103800.2	Wheat	mitochondrion	67.01	72.38
Bra017890.1-P	Field mustard	cytosol	15.6	67.78
KRG95283	Soybean	cytosol, mitochondrion, plastid	28.13	67.07
CDY55062	Canola	cytosol	32.23	67.02
CDY55064	Canola	plasma membrane	53.45	63.72
CDY14675	Canola	cytosol	70.84	62.95
HORVU7Hr1G040460.4	Barley	mitochondrion	74.94	58.25
PGSC0003DMT400007571	Potato	plastid	36.06	32.05
PGSC0003DMT400035288	Potato	plastid	35.29	31.58
PGSC0003DMT400012840	Potato	cytosol, mitochondrion, plasma membrane	17.65	25.27
PGSC0003DMT400060275	Potato	mitochondrion	27.88	23.34
PGSC0003DMT400033905	Potato	mitochondrion	25.32	21.71
PGSC0003DMT400063962	Potato	mitochondrion, plastid	25.83	21.44
Os02t0739700-01	Rice	plastid	2.05	1.81

Protein Annotations

KEGG:00010+1.2.4.1	KEGG:00020+1.2.4.1	KEGG:00620+1.2.4.1	MapMan:2.2.1.1.1	Gene3D:3.40.50.970	ProteinID:ABA40441
ProteinID:ABA40441.1	ProteinID:CAA81558	ProteinID:CAA81558.1	ncoils:Coil	InterPro:DH_E1	EMBL:DQ191640
GO:GO:0003674	GO:GO:0003824	GO:GO:0004739	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005739	GO:GO:0005759	GO:GO:0005975	GO:GO:0006086	GO:GO:0006091
GO:GO:0006096	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009058
GO:GO:0009987	GO:GO:0016491	GO:GO:0016624	GO:GO:0043231	GO:GO:0055114	UniProt:P52903
PFAM:PF00676	EnsemblPlantsGene:PGSC0003DMG400022607	PGSC:PGSC0003DMG400022607	EnsemblPlants:PGSC0003DMT400058223	PANTHER:PTHR11516	PANTHER:PTHR11516:SF38
InterPro:Pyrv_DH_E1_asu_subgrp-y	SUPFAM:SSF52518	InterPro:THDP-binding	TIGRFAMs:TIGR03182	UniParc:UPI0000130C1C	EMBL:Z26949

Description

Pyruvate dehydrogenase E1 component subunit alpha, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:P52903]

Coordinates

chr5:+:6647201..6654751

Molecular Weight (calculated)

43230.8 Da

IEP (calculated)

7.831

GRAVY (calculated)

-0.316

Length

391 amino acids

Sequence
(BLAST)

001: MALSTSRAIN HIMKPLSAAV CATRRLSSDS TATITVETSL PFTSHNIDPP SRSVETSPKE LMTFFKDMTE MRRMEIAADS LYKAKLIRGF CHLYDGQEAV
101: AVGMEAAITK KDCIITAYRD HCIFLGRGGT LVEAFAELMG RRDGCSRGKG GSMHFYKKES GFYGGHGIVG AQVPLGIGLA FAQKYKKEDY VTFAMYGDGA
201: ANQGQLFEAL NMAALWDLPA ILVCENNHYG MGTAEWRAAK SPAYYKRGDY VPGLRVDGMD VFAVKQACTF AKQHALKNGP IILEMDTYRY HGHSMSDPGS
301: TYRTRDEISG VRQERDPVER IRSLILAHNI ATEAELKDIE KENRKVVDEA IAKAKESPMP DPSELFTNVY VKGFGVEAYG ADRKELRATL P

Best Arabidopsis Sequence Match ( AT1G59900.1 )
(BLAST)

001: MALSRLSSRS NIITRPFSAA FSRLISTDTT PITIETSLPF TAHLCDPPSR SVESSSQELL DFFRTMALMR RMEIAADSLY KAKLIRGFCH LYDGQEAVAI
101: GMEAAITKKD AIITAYRDHC IFLGRGGSLH EVFSELMGRQ AGCSKGKGGS MHFYKKESSF YGGHGIVGAQ VPLGCGIAFA QKYNKEEAVT FALYGDGAAN
201: QGQLFEALNI SALWDLPAIL VCENNHYGMG TAEWRAAKSP SYYKRGDYVP GLKVDGMDAF AVKQACKFAK QHALEKGPII LEMDTYRYHG HSMSDPGSTY
301: RTRDEISGVR QERDPIERIK KLVLSHDLAT EKELKDMEKE IRKEVDDAIA KAKDCPMPEP SELFTNVYVK GFGTESFGPD RKEVKASLP

Arabidopsis Description

E1 ALPHAPyruvate dehydrogenase E1 component subunit alpha-1, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:P52901]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.