Factsheet for PGSC0003DMT400033905

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 10
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g059840.2.1	Tomato	mitochondrion	91.89	91.89
PGSC0003DMT400063962	Potato	mitochondrion, plastid	64.25	62.21
Bra016423.1-P	Field mustard	mitochondrion	60.96	59.02
CDX96593	Canola	mitochondrion	60.96	59.02
CDY65109	Canola	mitochondrion	60.75	58.56
VIT_18s0001g14980.t01	Wine grape	plastid	60.31	58.39
CDY65512	Canola	mitochondrion	60.31	58.26
Bra017912.1-P	Field mustard	mitochondrion	60.09	58.05
CDY50237	Canola	mitochondrion	60.09	58.05
TraesCS4B01G071500.1	Wheat	mitochondrion	58.77	57.51
PGSC0003DMT400012840	Potato	cytosol, mitochondrion, plasma membrane	34.43	57.51
TraesCS5B01G121400.3	Wheat	mitochondrion	58.99	57.36
TraesCS5D01G126700.1	Wheat	mitochondrion	58.99	57.36
TraesCS5A01G120000.3	Wheat	mitochondrion	58.77	57.14
KRH64579	Soybean	endoplasmic reticulum	59.87	57.11
HORVU5Hr1G034820.3	Barley	mitochondrion	57.89	56.29
KRH53343	Soybean	mitochondrion	60.09	56.26
GSMUA_Achr3P18980_001	Banana	mitochondrion	56.36	55.87
Zm00001d023694_P001	Maize	mitochondrion	59.21	55.33
Os12t0183100-01	Rice	mitochondrion	58.77	55.14
PGSC0003DMT400060275	Potato	mitochondrion	56.14	54.82
KXG23145	Sorghum	mitochondrion	59.65	53.75
AT1G21400.5	Thale cress	plastid	60.31	52.48
AT5G34780.1	Thale cress	cytosol, mitochondrion	31.8	39.73
PGSC0003DMT400058223	Potato	mitochondrion	21.71	25.32
PGSC0003DMT400004851	Potato	mitochondrion	20.83	24.48
PGSC0003DMT400035288	Potato	plastid	20.83	21.74
PGSC0003DMT400007571	Potato	plastid	20.39	21.14

Protein Annotations

EnsemblPlants:PGSC0003DMT400033905	EnsemblPlantsGene:PGSC0003DMG400013029	EntrezGene:102587414	Gene3D:3.40.50.970	GO:GO:0003674	GO:GO:0003824
GO:GO:0008150	GO:GO:0008152	GO:GO:0016624	GO:GO:0055114	InterPro:DH_E1	InterPro:THDP-binding
PANTHER:PTHR43380	PANTHER:PTHR43380:SF2	PFAM:PF00676	PGSC:PGSC0003DMG400013029	RefSeq:XP_006356717.1	SUPFAM:SSF52518
UniParc:UPI000296C7EA	UniProt:M1AZW6	MapMan:4.2.7.2.1.1	:	:	:

Description

Branched chain alpha-keto acid dehydrogenase E1-alpha subunit [Source:PGSC_GENE;Acc:PGSC0003DMG400013029]

Coordinates

chr6:-:41407026..41412160

Molecular Weight (calculated)

51314.7 Da

IEP (calculated)

6.837

GRAVY (calculated)

-0.448

Length

456 amino acids

Sequence
(BLAST)

001: MATWFLRSSN NHGVIRKLLM AFSGKSTTTV VRRCFGSMEA GQKLDPYSCD DDYRENIDHR NQNLDFPGGK IPLTSQLKFI SEASDKRLPC YRVLHDDGSL
101: ISNTIHDQLG EEVAVNMYSA MVTLKTMDTF LYEAQRQGRI SFYMTTFGEE AINIASAAAL SPHDFVLPQY REAGVLLWRG FTVQECTNQC FGNKDDKGKG
201: RQMPVHYGSN KHNVITISSP LATQISQAAG VAYSLKMDKR GACAVAYTGE GATSEGDFHA GLNFAAVMEA PVIFICRNNG WAISTPVHEQ FRSDGIVAKG
301: LGYGIRSIRV DGNDVIAVYN AVRAARNMAI SEERPILVEA MTYRVGHHST SDDSTKYRPT NEIEYWKTAR SPIAIFRKYI QRNGWWSDDQ ESELYRDVKK
401: QVLEAIKTAE GMEKPALTEL FSDVYEQMPP NLHEQERSIR DAINKYPKDY PTDFHV

Best Arabidopsis Sequence Match ( AT1G21400.1 )
(BLAST)

001: MAIWFARSKT LVSSLRHNLN LSTILIKRDY SHRPIFYTTS QLSSTAYLSP FGSLRHESTA VETQADHLVQ QIDEVDAQEL DFPGGKVGYT SEMKFIPESS
101: SRRIPCYRVL DEDGRIIPDS DFIPVSEKLA VRMYEQMATL QVMDHIFYEA QRQGRISFYL TSVGEEAINI ASAAALSPDD VVLPQYREPG VLLWRGFTLE
201: EFANQCFGNK ADYGKGRQMP IHYGSNRLNY FTISSPIATQ LPQAAGVGYS LKMDKKNACT VTFIGDGGTS EGDFHAGLNF AAVMEAPVVF ICRNNGWAIS
301: THISEQFRSD GIVVKGQAYG IRSIRVDGND ALAVYSAVRS AREMAVTEQR PVLIEMMTYR VGHHSTSDDS TKYRAADEIQ YWKMSRNPVN RFRKWVEDNG
401: WWSEEDESKL RSNARKQLLQ AIQAAEKWEK QPLTELFNDV YDVKPKNLEE QELGLKELVK KQPQDYPPGF HV

Arabidopsis Description

Thiamin diphosphate-binding fold (THDP-binding) superfamily protein [Source:TAIR;Acc:AT1G21400]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.