Factsheet for PGSC0003DMT400060275

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 8

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g056480.2.1	Tomato	plastid	95.5	95.5
VIT_04s0044g01490.t01	Wine grape	mitochondrion	70.02	67.98
Bra006017.1-P	Field mustard	plastid	63.81	63.68
CDX78354	Canola	plastid	63.81	63.14
CDX81122	Canola	plastid	62.74	62.74
AT5G09300.1	Thale cress	plastid	62.74	62.08
KRG99480	Soybean	cytosol	26.98	62.07
KRH64030	Soybean	mitochondrion, plastid	62.95	62.03
KRH53908	Soybean	cytosol	15.85	61.67
GSMUA_Achr3P18980_001	Banana	mitochondrion	60.17	61.09
TraesCS4B01G071500.1	Wheat	mitochondrion	60.39	60.52
TraesCS5B01G121400.3	Wheat	mitochondrion	60.6	60.34
TraesCS5D01G126700.1	Wheat	mitochondrion	60.39	60.13
TraesCS5A01G120000.3	Wheat	mitochondrion	60.17	59.91
Zm00001d023694_P001	Maize	mitochondrion	61.67	59.02
Os12t0183100-01	Rice	mitochondrion	61.03	58.64
HORVU5Hr1G034820.3	Barley	mitochondrion	58.89	58.64
PGSC0003DMT400063962	Potato	mitochondrion, plastid	59.1	58.6
PGSC0003DMT400012840	Potato	cytosol, mitochondrion, plasma membrane	33.19	56.78
KXG23145	Sorghum	mitochondrion	61.46	56.72
PGSC0003DMT400033905	Potato	mitochondrion	54.82	56.14
PGSC0003DMT400004851	Potato	mitochondrion	23.34	28.09
PGSC0003DMT400058223	Potato	mitochondrion	23.34	27.88
PGSC0003DMT400035288	Potato	plastid	20.77	22.2
PGSC0003DMT400007571	Potato	plastid	20.34	21.59

Protein Annotations

EntrezGene:102601702	Gene3D:3.40.50.970	MapMan:4.2.7.2.1.1	InterPro:DH_E1	GO:GO:0003674	GO:GO:0003824
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0008150
GO:GO:0008152	GO:GO:0016624	GO:GO:0055114	UniProt:M1C5I5	PFAM:PF00676	EnsemblPlantsGene:PGSC0003DMG402023446
PGSC:PGSC0003DMG402023446	EnsemblPlants:PGSC0003DMT400060275	PANTHER:PTHR43380	PANTHER:PTHR43380:SF2	SUPFAM:SSF52518	InterPro:THDP-binding
UniParc:UPI0002954FD0	RefSeq:XP_006345758.1	:	:	:	:

Description

Branched-chain alpha keto-acid dehydrogenase E1 alpha subunit [Source:PGSC_GENE;Acc:PGSC0003DMG402023446]

Coordinates

chr5:+:51908487..51912633

Molecular Weight (calculated)

52974.9 Da

IEP (calculated)

7.748

GRAVY (calculated)

-0.342

Length

467 amino acids

Sequence
(BLAST)

001: MALLLSKSRK LICLKPKIGF LSSVYHHHTL ISPNLRTPFR ILGLNQPHFA SFRFESTKVQ TQLNSMHSIH NDSQVLDFPG GEVKFTSHLN FIPETREERV
101: HCYRVLDDYG YPITSDFAQI EKEVALKIFT DMVTLQTMDT IFYEAQRQGR ISFYLTTVGE EAINIASAAA LKTDDFIFPQ YRESGVLLWR GFTIQEFANQ
201: LFGNKHDYGK GRQMPIHYGS NKHNYITVAS TVATQLPHAV GAAYALKMDA KNACTIVYFG DGGSSTGDFH AALNFAAVLD APVIFFCRNN GFAISTPVSD
301: QFRSDGVVTK GQAYGIRSIR VDGNDALAVF TAVHEARKMA VTEHKPILVE ALTYRAGHHS TSDDSTKYRP AKEIDWWRRE RDPVSRFRKW IEREGWLNSQ
401: VESELCSNIR KQVLQAIQVA EKQEKPPIKD VFTDVYDVSP ANLQEQEISI RETIRKHPQD YPTDVPL

Best Arabidopsis Sequence Match ( AT5G09300.1 )
(BLAST)

001: MALHLRSSFS SKSTLLNILR HNLGFGSRSH VTRHIRQILP HDPPLRGSQN PISRLCNTMA EPETLSSFVQ HEYANNHQVM DFPGGKVAFT PEIQFISESD
101: KERVPCYRVL DDNGQLITNS QFVQVSEEVA VKIYSDMVTL QIMDNIFYEA QRQGRLSFYA TAIGEEAINI ASAAALTPQD VIFPQYREPG VLLWRGFTLQ
201: EFANQCFGNK SDYGKGRQMP VHYGSNKLNY FTVSATIATQ LPNAVGAAYS LKMDKKDACA VTYFGDGGTS EGDFHAALNI AAVMEAPVLF ICRNNGWAIS
301: TPTSDQFRSD GVVVKGRAYG IRSIRVDGND ALAMYSAVHT AREMAIREQR PILIEALTYR VGHHSTSDDS TRYRSAGEIE WWNKARNPLS RFRTWIESNG
401: WWSDKTESDL RSRIKKEMLE ALRVAEKTEK PNLQNMFSDV YDVPPSNLRE QELLVRQTIN SHPQDYPSDV PL

Arabidopsis Description

2-oxoisovalerate dehydrogenase subunit alpha 2, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q84JL2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.