Factsheet for PGSC0003DMT400012840

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plasma membrane, cytosol

Predictor Summary:

nucleus 1
mitochondrion 4
cytosol 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g055880.1.1	Tomato	cytosol	33.33	67.41
PGSC0003DMT400063962	Potato	mitochondrion, plastid	61.9	35.88
PGSC0003DMT400033905	Potato	mitochondrion	57.51	34.43
CDX96593	Canola	mitochondrion	58.24	33.76
GSMUA_Achr3P18980_001	Banana	mitochondrion	56.78	33.7
TraesCS4B01G071500.1	Wheat	mitochondrion	57.51	33.69
Solyc12g055890.1.1	Tomato	mitochondrion	36.63	33.67
Bra016423.1-P	Field mustard	mitochondrion	57.88	33.55
TraesCS5B01G121400.3	Wheat	mitochondrion	57.51	33.48
TraesCS5D01G126700.1	Wheat	mitochondrion	57.51	33.48
Os12t0183100-01	Rice	mitochondrion	59.34	33.33
VIT_18s0001g14980.t01	Wine grape	plastid	57.51	33.33
TraesCS5A01G120000.3	Wheat	mitochondrion	57.14	33.26
PGSC0003DMT400060275	Potato	mitochondrion	56.78	33.19
HORVU5Hr1G034820.3	Barley	mitochondrion	56.78	33.05
Zm00001d023694_P001	Maize	mitochondrion	58.97	32.99
CDY65512	Canola	mitochondrion	56.78	32.84
CDY50237	Canola	mitochondrion	56.41	32.63
Bra017912.1-P	Field mustard	mitochondrion	56.41	32.63
CDY65109	Canola	mitochondrion	56.41	32.56
KXG23145	Sorghum	mitochondrion	59.34	32.02
KRH53343	Soybean	mitochondrion	54.58	30.6
KRH64579	Soybean	endoplasmic reticulum	53.48	30.54
AT5G34780.1	Thale cress	cytosol, mitochondrion	40.29	30.14
AT1G21400.5	Thale cress	plastid	56.78	29.58
PGSC0003DMT400004851	Potato	mitochondrion	25.64	18.04
PGSC0003DMT400058223	Potato	mitochondrion	25.27	17.65
PGSC0003DMT400007571	Potato	plastid	22.71	14.09
PGSC0003DMT400035288	Potato	plastid	21.98	13.73

Protein Annotations

EnsemblPlants:PGSC0003DMT400012840	EnsemblPlantsGene:PGSC0003DMG400004998	Gene3D:3.40.50.970	GO:GO:0003674	GO:GO:0003824	GO:GO:0008150
GO:GO:0008152	GO:GO:0016624	GO:GO:0055114	InterPro:DH_E1	InterPro:THDP-binding	PANTHER:PTHR43380
PANTHER:PTHR43380:SF2	PFAM:PF00676	PGSC:PGSC0003DMG400004998	SEG:seg	SUPFAM:SSF52518	UniParc:UPI000294A843
UniProt:M1A1V6	MapMan:50.1.2	:	:	:	:

Description

2-oxoisovalerate dehydrogenase [Source:PGSC_GENE;Acc:PGSC0003DMG400004998]

Coordinates

chr12:-:53519651..53522176

Molecular Weight (calculated)

30762.4 Da

IEP (calculated)

5.445

GRAVY (calculated)

-0.346

Length

273 amino acids

Sequence
(BLAST)

001: MQILASNEAL ICKSLSTNGT ETKHESVNQN NDSLILISPT SAVKKDLAVK MYRNMVTLQI MDHIFDEAQK QGRLSLYMAT VGEEVINIAS AAALTTDDIV
101: LPQGDFHAAL NFAAVLEAPV IFLCRNNGWA VSTPVNEQFR SDGIAIKGQV YGVRSIRVDG TDALAVYSAI RAARKMAIKE QRPIIVEAIA YRVSDHASSH
201: DATQYRSREE SEYWRRRCSV SRFRKWIQKN GWWSDEEELE FRGNTKEQVL QALEKAEETE KPPLTDLFTD VYD

Best Arabidopsis Sequence Match ( AT1G21400.1 )
(BLAST)

001: MAIWFARSKT LVSSLRHNLN LSTILIKRDY SHRPIFYTTS QLSSTAYLSP FGSLRHESTA VETQADHLVQ QIDEVDAQEL DFPGGKVGYT SEMKFIPESS
101: SRRIPCYRVL DEDGRIIPDS DFIPVSEKLA VRMYEQMATL QVMDHIFYEA QRQGRISFYL TSVGEEAINI ASAAALSPDD VVLPQYREPG VLLWRGFTLE
201: EFANQCFGNK ADYGKGRQMP IHYGSNRLNY FTISSPIATQ LPQAAGVGYS LKMDKKNACT VTFIGDGGTS EGDFHAGLNF AAVMEAPVVF ICRNNGWAIS
301: THISEQFRSD GIVVKGQAYG IRSIRVDGND ALAVYSAVRS AREMAVTEQR PVLIEMMTYR VGHHSTSDDS TKYRAADEIQ YWKMSRNPVN RFRKWVEDNG
401: WWSEEDESKL RSNARKQLLQ AIQAAEKWEK QPLTELFNDV YDVKPKNLEE QELGLKELVK KQPQDYPPGF HV

Arabidopsis Description

Thiamin diphosphate-binding fold (THDP-binding) superfamily protein [Source:TAIR;Acc:AT1G21400]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.