Factsheet for VIT_18s0001g14980.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 5

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g059850.1.1	Tomato	cytosol	59.02	73.16
GSMUA_Achr3P18980_001	Banana	mitochondrion	64.76	66.3
Bra017912.1-P	Field mustard	mitochondrion	64.12	63.98
CDY50237	Canola	mitochondrion	64.12	63.98
Bra016423.1-P	Field mustard	mitochondrion	63.91	63.91
KRH64579	Soybean	endoplasmic reticulum	64.76	63.81
CDY65512	Canola	mitochondrion	63.91	63.77
TraesCS4B01G071500.1	Wheat	mitochondrion	62.84	63.52
CDX96593	Canola	mitochondrion	63.48	63.48
TraesCS5B01G121400.3	Wheat	mitochondrion	63.06	63.33
TraesCS5D01G126700.1	Wheat	mitochondrion	63.06	63.33
VIT_04s0044g01490.t01	Wine grape	mitochondrion	64.54	63.2
Os12t0183100-01	Rice	mitochondrion	65.18	63.17
TraesCS5A01G120000.3	Wheat	mitochondrion	62.84	63.11
KRH53343	Soybean	mitochondrion	64.97	62.83
CDY65109	Canola	mitochondrion	63.06	62.79
Zm00001d023694_P001	Maize	mitochondrion	64.76	62.5
HORVU5Hr1G034820.3	Barley	mitochondrion	62.21	62.47
KXG23145	Sorghum	mitochondrion	65.82	61.26
PGSC0003DMT400033905	Potato	mitochondrion	58.39	60.31
Solyc06g059840.2.1	Tomato	mitochondrion	58.17	60.09
Solyc04g063350.2.1	Tomato	mitochondrion	59.24	59.11
PGSC0003DMT400063962	Potato	mitochondrion, plastid	58.81	58.81
AT1G21400.5	Thale cress	plastid	64.97	58.4
PGSC0003DMT400012840	Potato	cytosol, mitochondrion, plasma membrane	33.33	57.51
Solyc12g055880.1.1	Tomato	cytosol	16.35	57.04
Solyc12g055890.1.1	Tomato	mitochondrion	35.67	56.57
AT5G34780.1	Thale cress	cytosol, mitochondrion	34.39	44.38
VIT_01s0026g00990.t01	Wine grape	mitochondrion, plastid	21.44	25.38
VIT_09s0018g01940.t01	Wine grape	mitochondrion, plastid	21.44	25.38
VIT_15s0048g02580.t01	Wine grape	plastid	21.02	22.86

Protein Annotations

EntrezGene:100245451	wikigene:100245451	Gene3D:3.40.50.970	MapMan:4.2.7.2.1.1	ProteinID:CBI19927	ProteinID:CBI19927.3
InterPro:DH_E1	UniProt:E0CQJ8	EMBL:FN595227	GO:GO:0003674	GO:GO:0003824	GO:GO:0008150
GO:GO:0008152	GO:GO:0016624	GO:GO:0055114	EntrezGene:LOC100245451	wikigene:LOC100245451	PFAM:PF00676
PANTHER:PTHR43380	PANTHER:PTHR43380:SF2	SUPFAM:SSF52518	TIGR:TC59667	InterPro:THDP-binding	UniParc:UPI00019852B3
ArrayExpress:VIT_18s0001g14980	EnsemblPlantsGene:VIT_18s0001g14980	EnsemblPlants:VIT_18s0001g14980.t01	unigene:Vvi.16952	RefSeq:XP_002268860	RefSeq:XP_002268860.1

Description

No Description!

Coordinates

chr18:+:12992480..12996562

Molecular Weight (calculated)

52832.4 Da

IEP (calculated)

6.100

GRAVY (calculated)

-0.426

Length

471 amino acids

Sequence
(BLAST)

001: MAAWFTRSGN IAHHVKRNMG SFLRPAPTLS DSSWSRSPAC LGNSPALLWA GRLESTRAQK LVDSDSENDA PLRDDDQAID FPGGRVMLTS EMQFIPGYPQ
101: QRVHCYHLMN NDGQTNMCSS FEQVSKEVAV KMYSDMITLQ IMDTIFYEAQ RQGRISFYLT SVGEEAINIA SAAALSPDDI VMAQYREPGV LLWRGFTLQE
201: FANQCFGNKA DCGKGRQMPI HYGSKKLNYF TVSSPLATQL PQAVGAAYSL KMDNKDACVV AYFGDGSTSE GDFHASLNFA AVMEAPVIFL CRNNGWAIST
301: PTSEQFRSDG IVVKGPAYGI QSIRVDGNDA LAVHNAVRAA RQMAIHEQRP ILVEALTYRV GHHSTSDDST KYRPVDEVKH WEMGQNPVNR FRKWVERNGW
401: WSEEDESQLR SSIRKQLLQA IQVAEKMEKP PLADLFSDVY DVPPSILFEQ EQQLRETIKR HPQDYPSDVP V

Best Arabidopsis Sequence Match ( AT1G21400.1 )
(BLAST)

001: MAIWFARSKT LVSSLRHNLN LSTILIKRDY SHRPIFYTTS QLSSTAYLSP FGSLRHESTA VETQADHLVQ QIDEVDAQEL DFPGGKVGYT SEMKFIPESS
101: SRRIPCYRVL DEDGRIIPDS DFIPVSEKLA VRMYEQMATL QVMDHIFYEA QRQGRISFYL TSVGEEAINI ASAAALSPDD VVLPQYREPG VLLWRGFTLE
201: EFANQCFGNK ADYGKGRQMP IHYGSNRLNY FTISSPIATQ LPQAAGVGYS LKMDKKNACT VTFIGDGGTS EGDFHAGLNF AAVMEAPVVF ICRNNGWAIS
301: THISEQFRSD GIVVKGQAYG IRSIRVDGND ALAVYSAVRS AREMAVTEQR PVLIEMMTYR VGHHSTSDDS TKYRAADEIQ YWKMSRNPVN RFRKWVEDNG
401: WWSEEDESKL RSNARKQLLQ AIQAAEKWEK QPLTELFNDV YDVKPKNLEE QELGLKELVK KQPQDYPPGF HV

Arabidopsis Description

Thiamin diphosphate-binding fold (THDP-binding) superfamily protein [Source:TAIR;Acc:AT1G21400]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.