Factsheet for VIT_15s0048g02580.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_01s0146g00310.t01
VIT_17s0000g00690.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G01090.1	VIT_01s0146g00310.t01	AT5G50850.1	21798944
AT1G01090.1	VIT_17s0000g00690.t01	AT5G50850.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU2Hr1G086290.1	Barley	extracellular, vacuole	22.17	93.2
CDY37427	Canola	cytosol, mitochondrion, plastid	32.33	90.91
CDY37428	Canola	cytosol	29.33	86.39
PGSC0003DMT400035288	Potato	plastid	82.68	81.92
KRH68960	Soybean	plastid	78.98	81.82
KRG97240	Soybean	plastid	79.91	81.03
CDY37473	Canola	plastid	78.98	80.85
Bra033286.1-P	Field mustard	plastid	79.21	80.52
CDX90009	Canola	plastid	79.21	80.52
Bra032619.1-P	Field mustard	plastid	78.98	80.47
CDY32445	Canola	plastid	78.98	80.47
AT1G01090.1	Thale cress	plastid	79.21	80.14
CDY15202	Canola	plastid	78.75	79.49
Solyc12g009400.1.1	Tomato	plastid	80.37	79.09
Solyc12g009410.1.1	Tomato	plastid	80.37	79.09
PGSC0003DMT400007571	Potato	plastid	80.14	78.86
KRH06359	Soybean	nucleus	78.52	78.7
KRH47800	Soybean	plastid	78.29	78.47
TraesCS2D01G010700.1	Wheat	golgi	75.75	78.1
TraesCS2A01G010100.1	Wheat	plastid	75.29	77.43
TraesCS2B01G012500.1	Wheat	plastid	75.29	77.43
Os04t0119400-01	Rice	plastid	75.98	77.41
Zm00001d004473_P001	Maize	plastid	75.52	76.4
GSMUA_Achr11P...	Banana	plastid	75.52	76.05
EES10385	Sorghum	plastid	75.06	75.41
Solyc07g042920.1.1	Tomato	cytosol, mitochondrion, plastid	49.42	75.09
HORVU2Hr1G001600.1	Barley	plastid	74.83	70.9
VIT_09s0018g01940.t01	Wine grape	mitochondrion, plastid	33.26	36.18
VIT_01s0026g00990.t01	Wine grape	mitochondrion, plastid	32.1	34.92
GSMUA_Achr5P18750_001	Banana	plastid	70.21	33.7
VIT_18s0001g14980.t01	Wine grape	plastid	22.86	21.02
VIT_04s0044g01490.t01	Wine grape	mitochondrion	20.55	18.5

Protein Annotations

KEGG:00010+1.2.4.1	KEGG:00020+1.2.4.1	KEGG:00620+1.2.4.1	EntrezGene:100264423	wikigene:100264423	Gene3D:3.40.50.970
MapMan:5.1.2.2.1.1	ProteinID:CBI38712	ProteinID:CBI38712.3	ncoils:Coil	UniProt:D7U830	InterPro:DH_E1
EMBL:FN596739	GO:GO:0003674	GO:GO:0003824	GO:GO:0004739	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0006086	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0016491	GO:GO:0016624	GO:GO:0043231	GO:GO:0055114	EntrezGene:LOC100264423	wikigene:LOC100264423
PFAM:PF00676	PANTHER:PTHR11516	PANTHER:PTHR11516:SF25	InterPro:Pyrv_DH_E1_asu_subgrp-y	SUPFAM:SSF52518	TIGR:TC58820
InterPro:THDP-binding	TIGRFAMs:TIGR03182	UniParc:UPI0001984DD7	ArrayExpress:VIT_15s0048g02580	EnsemblPlantsGene:VIT_15s0048g02580	EnsemblPlants:VIT_15s0048g02580.t01
unigene:Vvi.6062	RefSeq:XP_002267676	RefSeq:XP_002267676.1	SEG:seg	:	:

Description

Pyruvate dehydrogenase E1 component subunit alpha [Source:UniProtKB/TrEMBL;Acc:D7U830]

Coordinates

chr15:-:16705122..16707944

Molecular Weight (calculated)

47763.2 Da

IEP (calculated)

6.939

GRAVY (calculated)

-0.294

Length

433 amino acids

Sequence
(BLAST)

001: MASSFLSSGI IQPLPLRSPD KPQTLFDHLK TTSTFLGSTS KLRSVSLSKP NLPNPHRRST VVAVSDVLKE KKTKSAASSS QLLITREEGL ELYEDMVLGR
101: AFEDMCAQMY YRGKMFGFVH LYNGQEAVST GFIKLLKKED CVVSTYRDHV HALSKGVPAR AVMSELFGKA TGCCRGQGGS MHMFSKEHNV LGGFAFIGEG
201: IPVATGAAFT SKYKREVLKE DCDEVTLAFF GDGTCNNGQF FECLNMASLW KLPIVFVVEN NLWAIGMSHL RATSDPEIWK KGPAFGMPGF HVDGMDVLKV
301: REVAKEAIQR ARRGEGPTLV ECETYRFRGH SLADPDELRD PAEKAHYAAR DPLTALKKYI FDNKLASEAE LKAIEKKIDE VVEESVEFAD ASPPPPRSQL
401: LENVFADPKG FGIGPDGSYR CEDPKFTEGT AHV

Best Arabidopsis Sequence Match ( AT1G01090.1 )
(BLAST)

001: MATAFAPTKL TATVPLHGSH ENRLLLPIRL APPSSFLGST RSLSLRRLNH SNATRRSPVV SVQEVVKEKQ STNNTSLLIT KEEGLELYED MILGRSFEDM
101: CAQMYYRGKM FGFVHLYNGQ EAVSTGFIKL LTKSDSVVST YRDHVHALSK GVSARAVMSE LFGKVTGCCR GQGGSMHMFS KEHNMLGGFA FIGEGIPVAT
201: GAAFSSKYRR EVLKQDCDDV TVAFFGDGTC NNGQFFECLN MAALYKLPII FVVENNLWAI GMSHLRATSD PEIWKKGPAF GMPGVHVDGM DVLKVREVAK
301: EAVTRARRGE GPTLVECETY RFRGHSLADP DELRDAAEKA KYAARDPIAA LKKYLIENKL AKEAELKSIE KKIDELVEEA VEFADASPQP GRSQLLENVF
401: ADPKGFGIGP DGRYRCEDPK FTEGTAQV

Arabidopsis Description

PDH-E1 ALPHAPyruvate dehydrogenase E1 component subunit alpha [Source:UniProtKB/TrEMBL;Acc:A0A178W8A7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.