Factsheet for GSMUA_Achr5P18750_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr5P25000_001
GSMUA_Achr8P09180_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G01090.1	GSMUA_Achr5P25000_001	AT5G50850.1	21798944
AT1G01090.1	GSMUA_Achr8P09180_001	AT5G50850.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU2Hr1G086290.1	Barley	extracellular, vacuole	10.53	92.23
CDY37427	Canola	cytosol, mitochondrion, plastid	14.63	85.71
GSMUA_Achr11P...	Banana	plastid	37.47	78.6
TraesCS2D01G010700.1	Wheat	golgi	34.15	73.33
TraesCS2A01G010100.1	Wheat	plastid	34.15	73.16
TraesCS2B01G012500.1	Wheat	plastid	34.15	73.16
Os04t0119400-01	Rice	plastid	34.37	72.94
Zm00001d004473_P001	Maize	plastid	34.37	72.43
EES10385	Sorghum	plastid	34.15	71.46
VIT_15s0048g02580.t01	Wine grape	plastid	33.7	70.21
KRH68960	Soybean	plastid	32.37	69.86
KRG97240	Soybean	plastid	32.59	68.85
Solyc07g042920.1.1	Tomato	cytosol, mitochondrion, plastid	21.73	68.77
PGSC0003DMT400035288	Potato	plastid	33.04	68.19
CDX90009	Canola	plastid	32.15	68.08
Bra033286.1-P	Field mustard	plastid	32.15	68.08
AT1G01090.1	Thale cress	plastid	32.26	67.99
CDY37473	Canola	plastid	31.82	67.85
HORVU2Hr1G001600.1	Barley	plastid	34.37	67.83
CDY15202	Canola	plastid	32.26	67.83
CDY32445	Canola	plastid	31.93	67.76
Bra032619.1-P	Field mustard	plastid	31.93	67.76
KRH06359	Soybean	nucleus	32.37	67.59
KRH47800	Soybean	plastid	32.37	67.59
CDY37428	Canola	cytosol	10.98	67.35
Solyc12g009410.1.1	Tomato	plastid	32.48	66.59
PGSC0003DMT400007571	Potato	plastid	32.37	66.36
Solyc12g009400.1.1	Tomato	plastid	32.37	66.36
GSMUA_Achr10P...	Banana	cytosol, mitochondrion	12.75	38.46
GSMUA_Achr4P20080_001	Banana	mitochondrion	7.21	37.79
GSMUA_Achr7P05520_001	Banana	cytosol, mitochondrion	11.75	36.43
GSMUA_Achr1P18330_001	Banana	cytosol, mitochondrion	13.08	36.42
GSMUA_Achr4P20070_001	Banana	cytosol	2.0	36.0
GSMUA_Achr3P18980_001	Banana	mitochondrion	11.31	22.17

Protein Annotations

KEGG:00010+1.2.4.1	KEGG:00020+1.2.4.1	KEGG:00620+1.2.4.1	Gene3D:1.25.70.10	MapMan:15.6.1.2.3.5	MapMan:15.6.2.2
Gene3D:3.40.50.970	MapMan:5.1.2.2.1.1	ncoils:Coil	InterPro:DH_E1	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003690	GO:GO:0003824	GO:GO:0004739	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0006086	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016491	GO:GO:0016624	GO:GO:0043231
GO:GO:0055114	EnsemblPlantsGene:GSMUA_Achr5G18750_001	EnsemblPlants:GSMUA_Achr5P18750_001	EnsemblPlants:GSMUA_Achr5T18750_001	InterPro:IPR038538	UniProt:M0SZQ4
InterPro:MTERF	InterPro:MTERF_sf	PFAM:PF00676	PFAM:PF02536	PANTHER:PTHR11516	PANTHER:PTHR11516:SF25
InterPro:Pyrv_DH_E1_asu_subgrp-y	SMART:SM00733	SUPFAM:SSF52518	InterPro:THDP-binding	TIGRFAMs:TIGR03182	UniParc:UPI0002958313
SEG:seg	:	:	:	:	:

Description

Pyruvate dehydrogenase E1 component subunit alpha [Source:GMGC_GENE;Acc:GSMUA_Achr5G18750_001]

Coordinates

chr5:+:20280620..20289486

Molecular Weight (calculated)

100889.0 Da

IEP (calculated)

8.205

GRAVY (calculated)

-0.075

Length

902 amino acids

Sequence
(BLAST)

001: MTSHTLFSHP NTTQHLFSSV HQSLLHAHFP WAPPLSLSLS LSNTREFPYI PTHTPASPPR SISLTFPNRP LNAAQLPIAI LLTPIHPRSL RPVFIPLLVS
101: LSQDLIKMSA FAAVRIPSPV LVGARSAGEK PCAPFVSCPA GHGLHRTHVR STRLGRPLLA VSSDVLSGQK SLGSNSSPSH HAVVSREEAL VLYEDMVLGR
201: VFEDMCAQMY YRGKMFGFVH LYNGQEAVST GFIKLLETRD SVVSTYRDHV HALSKGVPAR AVMAELFGKA TGCCRGQGGS MHMFSAPHNL LGGFAFIGEG
301: IPVATGAAFS SKYRHEVLKE SNPNGLDVTV AFFGDGTCNN GQFFECLNMA QLWKLPIVFV VENNLWAIGM SHLRATSDPE IWKKGPAFGM PGVHVDGMDV
401: LKVREVAVEA IGRARSGEGP TLVECETYRF RGHSLADPDE LRKPDEKAHY AARDPIITLK KYILENSLAS ETELKAIEKK IDELIEDSVE FADSTFWSLQ
501: ELHLDEKEAE ALFLQHPELE LVPPESLRSR VLALQSVGID DLSLRRTVAR RPEILSAPEL GPFLEFVRDE LKGLKPAKLE RLLTTTHPEF LTGIAARVTR
601: LMEHGVPGEK LGHLLNHVHI RKVFCERPLK DLEEMILFLK RFSWPDLVIR RPMILNLDLH DQLIPRVEFL AELGGGDEAA AAALIAKLPA LLSYTVEHFE
701: SHLEFWRSVG LSDEELFKIA LVYPNIFSVS KERKLGPRVE FLRQCGMDAE DIFRFLVKAP LYVSLSFKGN LSKKLTFLVK IGYKHRTREL AWAVGATTRT
801: SCENMQRVVG LFFSYGLSCE DVLAMSKKHP QVLQYNHASL EKKLEFLIGY MERDVGEILV FPAFLGYKLD DRIKKRYEIK REVRGKGMSL NKLLSVSTDR
901: FY

Best Arabidopsis Sequence Match ( AT1G01090.1 )
(BLAST)

001: MATAFAPTKL TATVPLHGSH ENRLLLPIRL APPSSFLGST RSLSLRRLNH SNATRRSPVV SVQEVVKEKQ STNNTSLLIT KEEGLELYED MILGRSFEDM
101: CAQMYYRGKM FGFVHLYNGQ EAVSTGFIKL LTKSDSVVST YRDHVHALSK GVSARAVMSE LFGKVTGCCR GQGGSMHMFS KEHNMLGGFA FIGEGIPVAT
201: GAAFSSKYRR EVLKQDCDDV TVAFFGDGTC NNGQFFECLN MAALYKLPII FVVENNLWAI GMSHLRATSD PEIWKKGPAF GMPGVHVDGM DVLKVREVAK
301: EAVTRARRGE GPTLVECETY RFRGHSLADP DELRDAAEKA KYAARDPIAA LKKYLIENKL AKEAELKSIE KKIDELVEEA VEFADASPQP GRSQLLENVF
401: ADPKGFGIGP DGRYRCEDPK FTEGTAQV

Arabidopsis Description

PDH-E1 ALPHAPyruvate dehydrogenase E1 component subunit alpha [Source:UniProtKB/TrEMBL;Acc:A0A178W8A7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.