CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH14338
KRH16935
KRH73802

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G01090.1	KRH14338	AT5G50850.1	21798944
AT1G01090.1	KRH16935	AT5G50850.1	21798944
AT1G01090.1	KRH73802	AT5G50850.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH68960	Soybean	plastid	94.15	96.17
HORVU2Hr1G086290.1	Barley	extracellular, vacuole	22.48	93.2
CDY37427	Canola	cytosol, mitochondrion, plastid	31.85	88.31
CDY37428	Canola	cytosol	29.74	86.39
KRH06359	Soybean	nucleus	81.03	80.09
VIT_15s0048g02580.t01	Wine grape	plastid	81.03	79.91
KRH47800	Soybean	plastid	80.8	79.86
PGSC0003DMT400035288	Potato	plastid	80.09	78.26
CDY37473	Canola	plastid	77.52	78.25
Bra032619.1-P	Field mustard	plastid	77.75	78.12
CDY32445	Canola	plastid	77.75	78.12
AT1G01090.1	Thale cress	plastid	77.99	77.8
Solyc12g009410.1.1	Tomato	plastid	80.09	77.73
PGSC0003DMT400007571	Potato	plastid	79.86	77.5
Bra033286.1-P	Field mustard	plastid	77.28	77.46
CDX90009	Canola	plastid	77.28	77.46
Solyc12g009400.1.1	Tomato	plastid	79.63	77.27
CDY15202	Canola	plastid	76.81	76.46
TraesCS2D01G010700.1	Wheat	golgi	73.54	74.76
Zm00001d004473_P001	Maize	plastid	74.47	74.3
TraesCS2B01G012500.1	Wheat	plastid	73.07	74.11
TraesCS2A01G010100.1	Wheat	plastid	73.07	74.11
Os04t0119400-01	Rice	plastid	73.54	73.88
EES10385	Sorghum	plastid	74.47	73.78
GSMUA_Achr11P...	Banana	plastid	73.77	73.26
Solyc07g042920.1.1	Tomato	cytosol, mitochondrion, plastid	48.48	72.63
HORVU2Hr1G001600.1	Barley	plastid	72.83	68.05
KRH69435	Soybean	mitochondrion	33.72	36.36
KRH74712	Soybean	mitochondrion	31.15	36.34
KRH45768	Soybean	mitochondrion	33.02	35.79
KRG99219	Soybean	mitochondrion	28.81	35.76
GSMUA_Achr5P18750_001	Banana	plastid	68.85	32.59
KRG95283	Soybean	cytosol, mitochondrion, plastid	12.18	31.71
KRG99480	Soybean	cytosol	12.41	26.11
KRH53908	Soybean	cytosol	6.56	23.33
KRH64579	Soybean	endoplasmic reticulum	22.25	19.87
KRH53343	Soybean	mitochondrion	22.25	19.51
KRH64030	Soybean	mitochondrion, plastid	20.61	18.57

Protein Annotations

KEGG:00010+1.2.4.1	KEGG:00020+1.2.4.1	KEGG:00620+1.2.4.1	EntrezGene:100802573	Gene3D:3.40.50.970	MapMan:5.1.2.2.1.1
EMBL:ACUP02012181	InterPro:DH_E1	EnsemblPlantsGene:GLYMA_19G260000	GO:GO:0003674	GO:GO:0003824	GO:GO:0004739
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006086	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0016491	GO:GO:0016624	GO:GO:0043231	GO:GO:0055114
UniProt:I1NCR0	EnsemblPlants:KRG97240	ProteinID:KRG97240	ProteinID:KRG97240.1	PFAM:PF00676	PANTHER:PTHR11516
PANTHER:PTHR11516:SF25	InterPro:Pyrv_DH_E1_asu_subgrp-y	SUPFAM:SSF52518	InterPro:THDP-binding	TIGRFAMs:TIGR03182	UniParc:UPI0000E647FE
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr19:+:50348442..50352471

Molecular Weight (calculated)

47522.9 Da

IEP (calculated)

7.267

GRAVY (calculated)

-0.311

Length

427 amino acids

Sequence
(BLAST)

001: MSLSVPKLAR PLPLHHHSSY GSLTMSFHTF TPFLGSTHKL RFISPIKLNA PRFNSSVVSV SDLFKNNKPK STTNLLITKE EGLQLYEDMV LGRSFEDMCA
101: QMYYRGKMFG FVHLYNGQEA VSTGFINFLK KEDCVVSTYR DHVHALSKGV PARAVMSELF GKATGCSRGQ GGSMHMFSKE HNLIGGFAFI AEGIPVATGA
201: AFSSKYRREV LKEADCDHVT LAFFGDGTCN NGQFYECLNM AALWKLPIVF VVENNLWAIG MSHLRATSDP QIWKKGPAFG MPGVHVDGMD VLKVREVAKE
301: AIERARRGEG PTLVECETYR FRGHSLADPD ELRDPAEKAH YAGRDPISAL KKYMIENKLA SEQELKTIDK KIEEVVEDAV EFADESPHPP RSQLLENVFA
401: DPKGFGIGPD GKYRCEDPKF TEGTAHV

Best Arabidopsis Sequence Match ( AT1G01090.1 )
(BLAST)

001: MATAFAPTKL TATVPLHGSH ENRLLLPIRL APPSSFLGST RSLSLRRLNH SNATRRSPVV SVQEVVKEKQ STNNTSLLIT KEEGLELYED MILGRSFEDM
101: CAQMYYRGKM FGFVHLYNGQ EAVSTGFIKL LTKSDSVVST YRDHVHALSK GVSARAVMSE LFGKVTGCCR GQGGSMHMFS KEHNMLGGFA FIGEGIPVAT
201: GAAFSSKYRR EVLKQDCDDV TVAFFGDGTC NNGQFFECLN MAALYKLPII FVVENNLWAI GMSHLRATSD PEIWKKGPAF GMPGVHVDGM DVLKVREVAK
301: EAVTRARRGE GPTLVECETY RFRGHSLADP DELRDAAEKA KYAARDPIAA LKKYLIENKL AKEAELKSIE KKIDELVEEA VEFADASPQP GRSQLLENVF
401: ADPKGFGIGP DGRYRCEDPK FTEGTAQV

Arabidopsis Description

PDH-E1 ALPHAPyruvate dehydrogenase E1 component subunit alpha [Source:UniProtKB/TrEMBL;Acc:A0A178W8A7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.