CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 7
plastid 4

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
mitochondrion: 27780359

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 27780359 doi

G Mustafa, S Komatsu

Graduate School of Life and Environmental Science, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG99219	Soybean	mitochondrion	83.5	95.64
GSMUA_Achr1P18330_001	Banana	cytosol, mitochondrion	70.56	85.8
Zm00001d014833_P001	Maize	cytosol, golgi	19.54	85.56
GSMUA_Achr7P05520_001	Banana	cytosol, mitochondrion	62.94	85.22
CDY31596	Canola	mitochondrion	14.47	85.07
KRH69435	Soybean	mitochondrion	85.03	84.6
KRH74712	Soybean	mitochondrion	76.9	82.79
TraesCS6A01G311800.1	Wheat	golgi	77.67	82.48
Bra035416.1-P	Field mustard	mitochondrion	80.46	81.49
CDY33613	Canola	mitochondrion	80.46	81.49
CDY24500	Canola	mitochondrion	80.46	81.49
CDY38784	Canola	mitochondrion	80.2	80.61
PGSC0003DMT400058223	Potato	mitochondrion	79.95	80.56
Solyc05g006520.2.1	Tomato	plastid	79.95	80.56
VIT_01s0026g00990.t01	Wine grape	mitochondrion, plastid	81.22	80.4
TraesCS6B01G342000.1	Wheat	mitochondrion	78.93	80.15
TraesCS6D01G291100.1	Wheat	mitochondrion	78.93	80.15
AT1G24180.1	Thale cress	mitochondrion	79.95	80.15
AT1G59900.1	Thale cress	mitochondrion	78.93	79.95
CDY11622	Canola	mitochondrion	79.44	79.85
Os02t0739600-01	Rice	mitochondrion	78.93	79.74
CDY16236	Canola	mitochondrion	78.17	79.59
EES05555	Sorghum	mitochondrion	78.43	79.23
Zm00001d017985_P001	Maize	mitochondrion	78.43	79.23
VIT_09s0018g01940.t01	Wine grape	mitochondrion, plastid	79.95	79.15
Bra024643.1-P	Field mustard	mitochondrion	77.67	79.07
CDY28458	Canola	mitochondrion	78.68	78.48
PGSC0003DMT400004851	Potato	mitochondrion	77.16	78.35
Solyc04g005080.2.1	Tomato	mitochondrion, unclear	77.67	78.26
CDY40292	Canola	mitochondrion	78.43	78.23
Bra012418.1-P	Field mustard	mitochondrion	78.43	78.03
Bra016238.1-P	Field mustard	mitochondrion	79.19	78.0
Zm00001d052289_P001	Maize	mitochondrion	77.16	77.95
HORVU6Hr1G076810.1	Barley	plastid	78.68	76.73
TraesCS7A01G238900.1	Wheat	mitochondrion	75.89	76.47
TraesCS7D01G199900.1	Wheat	golgi	76.14	76.14
Zm00001d044748_P002	Maize	mitochondrion	74.87	75.26
EER88157	Sorghum	mitochondrion	75.13	74.94
TraesCS7B01G103800.2	Wheat	mitochondrion	68.02	74.03
Os06t0246500-01	Rice	plastid	74.37	73.62
Bra017890.1-P	Field mustard	cytosol	15.99	70.0
Zm00001d014514_P001	Maize	cytosol, mitochondrion, plastid	24.11	69.34
KRG95283	Soybean	cytosol, mitochondrion, plastid	27.92	67.07
CDY14675	Canola	cytosol	71.57	64.09
CDY55064	Canola	plasma membrane	52.28	62.8
HORVU7Hr1G040460.4	Barley	mitochondrion	75.89	59.44
KRH68960	Soybean	plastid	36.04	33.97
KRG97240	Soybean	plastid	35.79	33.02
KRH06359	Soybean	nucleus	34.77	31.71
KRH47800	Soybean	plastid	34.77	31.71
KRH53908	Soybean	cytosol	8.38	27.5
KRG99480	Soybean	cytosol	12.18	23.65
KRH64030	Soybean	mitochondrion, plastid	25.63	21.31
KRH53343	Soybean	mitochondrion	25.38	20.53
KRH64579	Soybean	endoplasmic reticulum	24.11	19.87
Solyc04g025710.1.1	Tomato	cytosol	5.08	18.52
Os02t0739700-01	Rice	plastid	2.79	2.49

Protein Annotations

KEGG:00010+1.2.4.1	KEGG:00020+1.2.4.1	KEGG:00620+1.2.4.1	EntrezGene:100781250	MapMan:2.2.1.1.1	Gene3D:3.40.50.970
EMBL:ACUP02005285	ncoils:Coil	InterPro:DH_E1	EnsemblPlantsGene:GLYMA_08G292800	GO:GO:0003674	GO:GO:0003824
GO:GO:0004739	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006086	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016491	GO:GO:0016624	GO:GO:0043231
GO:GO:0055114	UniProt:I1KXM1	EnsemblPlants:KRH45768	ProteinID:KRH45768	ProteinID:KRH45768.1	PFAM:PF00676
PANTHER:PTHR11516	PANTHER:PTHR11516:SF38	InterPro:Pyrv_DH_E1_asu_subgrp-y	SUPFAM:SSF52518	InterPro:THDP-binding	TIGRFAMs:TIGR03182
UniParc:UPI0001BA5C32	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr8:-:40707600..40718759

Molecular Weight (calculated)

43598.2 Da

IEP (calculated)

7.473

GRAVY (calculated)

-0.302

Length

394 amino acids

Sequence
(BLAST)

001: MALSRVVAQS SQSNLLKPLA SYLSLRRRSV STSSDPLTIE TSVPFTSHNC DAPSRAVETS SAELFAFFHD MALMRRMEIA ADSLYKAKLI RGFCHLYDGQ
101: EAVAVGMEAA ITRKDCVITA YRDHCTFLAR GGTLIEIFSE LMGRRDGCSK GKGGSMHFYR KEGGFYGGHG IVGAQVPLGC GLAFAQKYCK DENVTFSMYG
201: DGAANQGQLF EALNISALWD LPSILVCENN HYGMGTAEWR AAKSPAYYKR GDYVPGLKVD GMDALAVKQA CKFAKEFALK NGPIILEMDT YRYHGHSMSD
301: PGSTYRTRDE ISGVRQERDP IERVRKLLLT HEIATEKELK DIEKEIRKEV DEAIAKAKES QMPEPSDLFT NVYVKGFGVE ACGADRKEVR AILP

Best Arabidopsis Sequence Match ( AT1G24180.1 )
(BLAST)

001: MALSRLSSRS NTFLKPAITA LPSSIRRHVS TDSSPITIET AVPFTSHLCE SPSRSVETSS EEILAFFRDM ARMRRMEIAA DSLYKAKLIR GFCHLYDGQE
101: ALAVGMEAAI TKKDAIITSY RDHCTFIGRG GKLVDAFSEL MGRKTGCSHG KGGSMHFYKK DASFYGGHGI VGAQIPLGCG LAFAQKYNKD EAVTFALYGD
201: GAANQGQLFE ALNISALWDL PAILVCENNH YGMGTATWRS AKSPAYFKRG DYVPGLKVDG MDALAVKQAC KFAKEHALKN GPIILEMDTY RYHGHSMSDP
301: GSTYRTRDEI SGVRQVRDPI ERVRKLLLTH DIATEKELKD MEKEIRKEVD DAVAQAKESP IPDASELFTN MYVKDCGVES FGADRKELKV TLP

Arabidopsis Description

IAR4Pyruvate dehydrogenase E1 component subunit alpha-2, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q8H1Y0]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.