CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 7
plastid 4

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
mitochondrion: 27780359

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 27780359 doi

G Mustafa, S Komatsu

Graduate School of Life and Environmental Science, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH74712	Soybean	mitochondrion	87.12	94.26
Zm00001d014833_P001	Maize	cytosol, golgi	19.95	87.78
GSMUA_Achr1P18330_001	Banana	cytosol, mitochondrion	71.21	87.04
GSMUA_Achr7P05520_001	Banana	cytosol, mitochondrion	63.64	86.6
CDY33613	Canola	mitochondrion	84.09	85.6
Bra035416.1-P	Field mustard	mitochondrion	83.59	85.09
CDY24500	Canola	mitochondrion	83.59	85.09
KRH45768	Soybean	mitochondrion	84.6	85.03
KRG99219	Soybean	mitochondrion	73.74	84.88
AT1G59900.1	Thale cress	mitochondrion	83.33	84.83
TraesCS6A01G311800.1	Wheat	golgi	78.54	83.83
CDY31596	Canola	mitochondrion	14.14	83.58
Solyc05g006520.2.1	Tomato	plastid	81.82	82.86
PGSC0003DMT400058223	Potato	mitochondrion	81.82	82.86
CDY38784	Canola	mitochondrion	81.06	81.89
TraesCS6B01G342000.1	Wheat	mitochondrion	80.05	81.7
CDY11622	Canola	mitochondrion	80.81	81.63
Os02t0739600-01	Rice	mitochondrion	80.3	81.54
TraesCS6D01G291100.1	Wheat	mitochondrion	79.8	81.44
CDY16236	Canola	mitochondrion	79.55	81.4
Solyc04g005080.2.1	Tomato	mitochondrion, unclear	80.05	81.07
PGSC0003DMT400004851	Potato	mitochondrion	79.29	80.93
Bra024643.1-P	Field mustard	mitochondrion	79.04	80.88
AT1G24180.1	Thale cress	mitochondrion	80.05	80.66
VIT_09s0018g01940.t01	Wine grape	mitochondrion, plastid	81.06	80.65
VIT_01s0026g00990.t01	Wine grape	mitochondrion, plastid	81.06	80.65
Bra012418.1-P	Field mustard	mitochondrion	79.8	79.8
CDY40292	Canola	mitochondrion	79.55	79.75
CDY28458	Canola	mitochondrion	79.55	79.75
Bra016238.1-P	Field mustard	mitochondrion	80.05	79.25
EES05555	Sorghum	mitochondrion	78.03	79.23
Zm00001d017985_P001	Maize	mitochondrion	78.03	79.23
Zm00001d052289_P001	Maize	mitochondrion	77.27	78.46
HORVU6Hr1G076810.1	Barley	plastid	79.8	78.22
TraesCS7A01G238900.1	Wheat	mitochondrion	75.76	76.73
TraesCS7D01G199900.1	Wheat	golgi	75.76	76.14
Zm00001d044748_P002	Maize	mitochondrion	74.24	75.0
Os06t0246500-01	Rice	plastid	75.25	74.87
EER88157	Sorghum	mitochondrion	73.99	74.18
TraesCS7B01G103800.2	Wheat	mitochondrion	67.68	74.03
KRG95283	Soybean	cytosol, mitochondrion, plastid	30.56	73.78
Zm00001d014514_P001	Maize	cytosol, mitochondrion, plastid	24.24	70.07
Bra017890.1-P	Field mustard	cytosol	15.4	67.78
CDY55064	Canola	plasma membrane	55.05	66.46
CDY14675	Canola	cytosol	73.23	65.91
HORVU7Hr1G040460.4	Barley	mitochondrion	75.51	59.44
KRH68960	Soybean	plastid	36.36	34.45
KRG97240	Soybean	plastid	36.36	33.72
KRH47800	Soybean	plastid	35.86	32.87
KRH06359	Soybean	nucleus	35.61	32.64
KRH53908	Soybean	cytosol	7.83	25.83
KRG99480	Soybean	cytosol	11.62	22.66
KRH64030	Soybean	mitochondrion, plastid	24.49	20.46
KRH53343	Soybean	mitochondrion	25.0	20.33
KRH64579	Soybean	endoplasmic reticulum	23.99	19.87
Solyc04g025710.1.1	Tomato	cytosol	5.3	19.44
Os02t0739700-01	Rice	plastid	2.78	2.49

Protein Annotations

KEGG:00010+1.2.4.1	KEGG:00020+1.2.4.1	KEGG:00620+1.2.4.1	EntrezGene:100816737	MapMan:2.2.1.1.1	Gene3D:3.40.50.970
EMBL:ACUP02000707	InterPro:DH_E1	EnsemblPlantsGene:GLYMA_02G026800	GO:GO:0003674	GO:GO:0003824	GO:GO:0004739
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006086	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0016491	GO:GO:0016624	GO:GO:0043231	GO:GO:0055114
UniProt:I1JBV5	EnsemblPlants:KRH69435	ProteinID:KRH69435	ProteinID:KRH69435.1	PFAM:PF00676	PANTHER:PTHR11516
PANTHER:PTHR11516:SF38	InterPro:Pyrv_DH_E1_asu_subgrp-y	SUPFAM:SSF52518	InterPro:THDP-binding	TIGRFAMs:TIGR03182	UniParc:UPI0002337965
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr2:+:2420200..2425620

Molecular Weight (calculated)

43282.7 Da

IEP (calculated)

7.831

GRAVY (calculated)

-0.292

Length

396 amino acids

Sequence
(BLAST)

001: MALSRLSHRS IGSTLTKPFS AAAASAASSR SISTSDTPLT IETSVPFTAH NCDPPSRAVA TSSSELLTFF RDMALMRRME IAADSLYKAK LIRGFCHLYD
101: GQEAVAVGME AAITKKDSII TAYRDHCIFV GRGGTLLEVF AELMGRKEGC SKGKGGSMHF YKKESGFYGG HGIVGAQVPL GCGLAFAQKY SKDESVTFAM
201: YGDGAANQGQ LFEALNIAAL WDLPAILVCE NNHYGMGTAE WRAAKSPAYY KRGDYVPGLK VDGMDVLAVK QACKFAKEHA LKNGPLILEM DTYRYHGHSM
301: SDPGSTYRTR DEISGVRQER DPIERVRKLV LSHDIAAEKE LKDIEKEVRK EVDEAIAKAK ESPMPDPSDL FTNVYVKGYG VETFGADRKE VRATLP

Best Arabidopsis Sequence Match ( AT1G59900.1 )
(BLAST)

001: MALSRLSSRS NIITRPFSAA FSRLISTDTT PITIETSLPF TAHLCDPPSR SVESSSQELL DFFRTMALMR RMEIAADSLY KAKLIRGFCH LYDGQEAVAI
101: GMEAAITKKD AIITAYRDHC IFLGRGGSLH EVFSELMGRQ AGCSKGKGGS MHFYKKESSF YGGHGIVGAQ VPLGCGIAFA QKYNKEEAVT FALYGDGAAN
201: QGQLFEALNI SALWDLPAIL VCENNHYGMG TAEWRAAKSP SYYKRGDYVP GLKVDGMDAF AVKQACKFAK QHALEKGPII LEMDTYRYHG HSMSDPGSTY
301: RTRDEISGVR QERDPIERIK KLVLSHDLAT EKELKDMEKE IRKEVDDAIA KAKDCPMPEP SELFTNVYVK GFGTESFGPD RKEVKASLP

Arabidopsis Description

E1 ALPHAPyruvate dehydrogenase E1 component subunit alpha-1, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:P52901]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.