CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 5
plastid 6

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
mitochondrion: 27780359
mitochondrion: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 27780359 doi

G Mustafa, S Komatsu

Graduate School of Life and Environmental Science, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY31596	Canola	mitochondrion	16.57	85.07
Zm00001d014833_P001	Maize	cytosol, golgi	22.09	84.44
KRH45768	Soybean	mitochondrion	95.64	83.5
KRH69435	Soybean	mitochondrion	84.88	73.74
GSMUA_Achr1P18330_001	Banana	cytosol, mitochondrion	68.31	72.53
CDY33613	Canola	mitochondrion	81.4	71.98
Bra035416.1-P	Field mustard	mitochondrion	81.4	71.98
CDY24500	Canola	mitochondrion	81.4	71.98
KRH74712	Soybean	mitochondrion	76.45	71.86
GSMUA_Achr7P05520_001	Banana	cytosol, mitochondrion	60.76	71.82
CDY38784	Canola	mitochondrion	80.81	70.92
TraesCS6A01G311800.1	Wheat	golgi	76.16	70.62
CDY16236	Canola	mitochondrion	79.36	70.54
AT1G24180.1	Thale cress	mitochondrion	80.52	70.48
CDY11622	Canola	mitochondrion	79.94	70.15
Bra024643.1-P	Field mustard	mitochondrion	78.78	70.03
Bra017890.1-P	Field mustard	cytosol	18.31	70.0
AT1G59900.1	Thale cress	mitochondrion	79.07	69.92
PGSC0003DMT400058223	Potato	mitochondrion	79.36	69.82
Solyc05g006520.2.1	Tomato	plastid	79.36	69.82
CDY28458	Canola	mitochondrion	79.65	69.37
VIT_01s0026g00990.t01	Wine grape	mitochondrion, plastid	80.23	69.35
Zm00001d014514_P001	Maize	cytosol, mitochondrion, plastid	27.62	69.34
Bra016238.1-P	Field mustard	mitochondrion	80.52	69.25
CDY40292	Canola	mitochondrion	79.36	69.11
Bra012418.1-P	Field mustard	mitochondrion	79.36	68.94
VIT_09s0018g01940.t01	Wine grape	mitochondrion, plastid	79.65	68.84
Os02t0739600-01	Rice	mitochondrion	77.91	68.72
TraesCS6D01G291100.1	Wheat	mitochondrion	77.33	68.56
TraesCS6B01G342000.1	Wheat	mitochondrion	77.33	68.56
Zm00001d017985_P001	Maize	mitochondrion	77.62	68.46
KRG95283	Soybean	cytosol, mitochondrion, plastid	32.56	68.29
EES05555	Sorghum	mitochondrion	77.33	68.21
PGSC0003DMT400004851	Potato	mitochondrion	76.74	68.04
TraesCS7A01G238900.1	Wheat	mitochondrion	77.03	67.77
Solyc04g005080.2.1	Tomato	mitochondrion, unclear	76.74	67.52
TraesCS7D01G199900.1	Wheat	golgi	77.33	67.51
Zm00001d052289_P001	Maize	mitochondrion	76.16	67.18
Zm00001d044748_P002	Maize	mitochondrion	76.16	66.84
EER88157	Sorghum	mitochondrion	75.87	66.08
HORVU6Hr1G076810.1	Barley	plastid	77.03	65.59
Os06t0246500-01	Rice	plastid	75.29	65.08
TraesCS7B01G103800.2	Wheat	mitochondrion	68.02	64.64
CDY55064	Canola	plasma membrane	59.88	62.8
CDY14675	Canola	cytosol	71.51	55.91
HORVU7Hr1G040460.4	Barley	mitochondrion	77.03	52.68
KRH68960	Soybean	plastid	35.76	29.43
KRG97240	Soybean	plastid	35.76	28.81
KRH06359	Soybean	nucleus	35.76	28.47
KRH47800	Soybean	plastid	35.47	28.24
KRH53908	Soybean	cytosol	8.43	24.17
KRG99480	Soybean	cytosol	13.95	23.65
Solyc04g025710.1.1	Tomato	cytosol	6.1	19.44
KRH64030	Soybean	mitochondrion, plastid	26.16	18.99
KRH53343	Soybean	mitochondrion	25.58	18.07
KRH64579	Soybean	endoplasmic reticulum	24.13	17.36
Os02t0739700-01	Rice	plastid	3.49	2.72

Protein Annotations

MapMan:2.2.1.1.1	Gene3D:3.40.50.970	EMBL:ACUP02011006	InterPro:DH_E1	EnsemblPlantsGene:GLYMA_18G130500	GO:GO:0003674
GO:GO:0003824	GO:GO:0008150	GO:GO:0008152	GO:GO:0016624	GO:GO:0055114	UniProt:I1N1B9
EnsemblPlants:KRG99219	ProteinID:KRG99219	ProteinID:KRG99219.1	PFAM:PF00676	PANTHER:PTHR11516	PANTHER:PTHR11516:SF38
SUPFAM:SSF52518	InterPro:THDP-binding	UniParc:UPI0002969918	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr18:+:18151884..18155983

Molecular Weight (calculated)

38081.6 Da

IEP (calculated)

8.141

GRAVY (calculated)

-0.290

Length

344 amino acids

Sequence
(BLAST)

001: MALSRVAQSS PSQSNLLKPL SSYLSLRRRS VSTSSEPLTV ETSVPFTSHN CDAPPRAVET SSAELFSFFR DMALMRRMEI AADSLYKAKL IRGFCHLYDG
101: QEAVAVGMEA AITRKDCIIT AYRDHCTFLA RGGTLIEVFA ELMGRRDGCS KGKGGSMHFY RKEGGFYGGH GIVGAQVPLG CGLAFAQKYC KDENVTFSMY
201: GDGAANQGQL FEALNISALW DLPSILVCEN NHYGMGTAEW RAAKSPSYYK RGDYVPGLKV DGMDALAVKQ ACKFAKEFAL KNGPIILEMD TYRYHGHSMS
301: DPGSTYRTRD EISGVRQERD PIERVRKLLL THEIATEKEL KVIE

Best Arabidopsis Sequence Match ( AT1G24180.1 )
(BLAST)

001: MALSRLSSRS NTFLKPAITA LPSSIRRHVS TDSSPITIET AVPFTSHLCE SPSRSVETSS EEILAFFRDM ARMRRMEIAA DSLYKAKLIR GFCHLYDGQE
101: ALAVGMEAAI TKKDAIITSY RDHCTFIGRG GKLVDAFSEL MGRKTGCSHG KGGSMHFYKK DASFYGGHGI VGAQIPLGCG LAFAQKYNKD EAVTFALYGD
201: GAANQGQLFE ALNISALWDL PAILVCENNH YGMGTATWRS AKSPAYFKRG DYVPGLKVDG MDALAVKQAC KFAKEHALKN GPIILEMDTY RYHGHSMSDP
301: GSTYRTRDEI SGVRQVRDPI ERVRKLLLTH DIATEKELKD MEKEIRKEVD DAVAQAKESP IPDASELFTN MYVKDCGVES FGADRKELKV TLP

Arabidopsis Description

IAR4Pyruvate dehydrogenase E1 component subunit alpha-2, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q8H1Y0]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.