Factsheet for Os06t0246500-01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 2
mitochondrion 8

Predictors

GFP

MS/MS

Papers

plastid: 27992503

msms PMID: 27992503 doi

S Xing, X Meng, L Zhou, H Mujahid, C Zhao, Y Zhang, C Wang, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER88157	Sorghum	mitochondrion	88.19	88.86
TraesCS7D01G199900.1	Wheat	golgi	87.44	88.32
Zm00001d044748_P002	Maize	mitochondrion	86.68	88.01
TraesCS7A01G238900.1	Wheat	mitochondrion	86.43	87.98
TraesCS7B01G103800.2	Wheat	mitochondrion	78.39	86.19
GSMUA_Achr1P18330_001	Banana	cytosol, mitochondrion	67.09	82.41
CDY31596	Canola	mitochondrion	13.82	82.09
Os02t0739600-01	Rice	mitochondrion	80.4	82.05
GSMUA_Achr7P05520_001	Banana	cytosol, mitochondrion	59.05	80.76
CDY70124	Canola	cytosol	27.64	75.86
KRG99219	Soybean	mitochondrion	65.08	75.29
KRH69435	Soybean	mitochondrion	74.87	75.25
CDY24500	Canola	mitochondrion	73.37	75.06
Bra035416.1-P	Field mustard	mitochondrion	73.37	75.06
Solyc05g006520.2.1	Tomato	plastid	73.62	74.94
CDY33613	Canola	mitochondrion	73.12	74.81
PGSC0003DMT400058223	Potato	mitochondrion	73.37	74.68
AT1G59900.1	Thale cress	mitochondrion	72.86	74.55
KRH45768	Soybean	mitochondrion	73.62	74.37
CDY38784	Canola	mitochondrion	73.12	74.23
CDY16236	Canola	mitochondrion	72.11	74.16
Bra024643.1-P	Field mustard	mitochondrion	71.61	73.64
AT1G24180.1	Thale cress	mitochondrion	72.61	73.54
CDY11622	Canola	mitochondrion	72.36	73.47
CDY40292	Canola	mitochondrion	72.61	73.16
CDY28458	Canola	mitochondrion	72.61	73.16
Bra012418.1-P	Field mustard	mitochondrion	72.61	72.98
KRH74712	Soybean	mitochondrion	66.83	72.68
VIT_09s0018g01940.t01	Wine grape	mitochondrion, plastid	72.61	72.61
PGSC0003DMT400004851	Potato	mitochondrion	70.6	72.42
Solyc04g005080.2.1	Tomato	mitochondrion, unclear	70.85	72.12
Bra016238.1-P	Field mustard	mitochondrion	72.11	71.75
VIT_01s0026g00990.t01	Wine grape	mitochondrion, plastid	70.85	70.85
HORVU7Hr1G040460.4	Barley	mitochondrion	87.44	69.18
Bra017890.1-P	Field mustard	cytosol	15.33	67.78
CDY55062	Canola	cytosol	30.65	64.89
KRG95283	Soybean	cytosol, mitochondrion, plastid	25.63	62.2
CDY14675	Canola	cytosol	67.34	60.91
CDY55064	Canola	plasma membrane	47.49	57.62
Os04t0119400-01	Rice	plastid	37.19	34.82
Os12t0183100-01	Rice	mitochondrion	25.88	21.19
Os02t0739700-01	Rice	plastid	2.51	2.27

Protein Annotations

KEGG:00010+1.2.4.1	KEGG:00020+1.2.4.1	KEGG:00620+1.2.4.1	MapMan:2.2.1.1.1	Gene3D:3.40.50.970	EntrezGene:4340640
EMBL:AK105105	ProteinID:BAD45661.1	ProteinID:BAF19195.1	ProteinID:BAS97030.1	InterPro:DH_E1	GO:GO:0003674
GO:GO:0003824	GO:GO:0004739	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005739	GO:GO:0005759	GO:GO:0005975	GO:GO:0006086	GO:GO:0006091	GO:GO:0006096
GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009058	GO:GO:0009987
GO:GO:0016491	GO:GO:0016624	GO:GO:0043231	GO:GO:0055114	EnsemblPlantsGene:Os06g0246500	EnsemblPlants:Os06t0246500-01
PFAM:PF00676	PANTHER:PTHR11516	PANTHER:PTHR11516:SF38	InterPro:Pyrv_DH_E1_asu_subgrp-y	UniProt:Q654V6	SUPFAM:SSF52518
InterPro:THDP-binding	TIGRFAMs:TIGR03182	UniParc:UPI000043A379	RefSeq:XP_015641790.1	SEG:seg	:

Description

Similar to Pyruvate dehydrogenase E1 alpha subunit (EC 1.2.4.1). (Os06t0246500-01)

Coordinates

chr6:+:7602364..7605689

Molecular Weight (calculated)

43657.5 Da

IEP (calculated)

8.761

GRAVY (calculated)

-0.249

Length

398 amino acids

Sequence
(BLAST)

001: MAAAVVLLRR LRGVTAAPRR AAAALPLTTS VRGVSDSTEP LTIETSVPYK SHIVDPPPRE VATTARELAT FFRDMSAMRR AEIAADSLYK AKLIRGFCHL
101: YDGQEAVAVG MEAATTRADA IITAYRDHCA YLARGGDLAA LFAELMGRRG GCSRGKGGSM HLYKKDANFY GGHGIVGAQV PLGCGLAFAQ RYRKEAAVTF
201: DLYGDGAANQ GQLFEALNMA ALWKLPVVLV CENNHYGMGT AEWRASKSPA YYKRGDYVPG LKVDGMDVLA VKQACKFAKQ HALENGPIIL EMDTYRYHGH
301: SMSDPGSTYR TRDEIAGIRQ ERDPIERVRK LLLAHDFATT QELKDMEKEI RKQVDTAIAK AKESPMPDPS ELFTNVYVND CGLESFGVDR KVVRTVLP

Best Arabidopsis Sequence Match ( AT1G24180.1 )
(BLAST)

001: MALSRLSSRS NTFLKPAITA LPSSIRRHVS TDSSPITIET AVPFTSHLCE SPSRSVETSS EEILAFFRDM ARMRRMEIAA DSLYKAKLIR GFCHLYDGQE
101: ALAVGMEAAI TKKDAIITSY RDHCTFIGRG GKLVDAFSEL MGRKTGCSHG KGGSMHFYKK DASFYGGHGI VGAQIPLGCG LAFAQKYNKD EAVTFALYGD
201: GAANQGQLFE ALNISALWDL PAILVCENNH YGMGTATWRS AKSPAYFKRG DYVPGLKVDG MDALAVKQAC KFAKEHALKN GPIILEMDTY RYHGHSMSDP
301: GSTYRTRDEI SGVRQVRDPI ERVRKLLLTH DIATEKELKD MEKEIRKEVD DAVAQAKESP IPDASELFTN MYVKDCGVES FGADRKELKV TLP

Arabidopsis Description

IAR4Pyruvate dehydrogenase E1 component subunit alpha-2, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q8H1Y0]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.