Factsheet for Solyc05g006520.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

mitochondrion 7
plastid 4

Predictors

GFP

MS/MS

Papers

plastid: 20363867
plastid: 22908117
plastid: 26371478
unclear: 26455813
nucleus: 28394025
extracellular: 29876421

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

msms PMID: 26371478 doi

M Suzuki, S Takahashi, T Kondo, H Dohra, Y Ito, Y Kiriiwa, M Hayashi, S Kamiya, M Kato, M Fujiwara, Y Fukao, M Kobayashi, N Nagata, R Motohashi

Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.

msms PMID: 26455813 doi

P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff

Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400058223	Potato	mitochondrion	98.98	98.98
Solyc04g005080.2.1	Tomato	mitochondrion, unclear	87.72	87.72
GSMUA_Achr7P05520_001	Banana	cytosol, mitochondrion	63.68	85.57
GSMUA_Achr1P18330_001	Banana	cytosol, mitochondrion	70.84	85.49
TraesCS6A01G311800.1	Wheat	golgi	79.03	83.29
CDY31596	Canola	mitochondrion	14.07	82.09
KRH69435	Soybean	mitochondrion	82.86	81.82
Bra035416.1-P	Field mustard	mitochondrion	81.07	81.49
CDY24500	Canola	mitochondrion	81.07	81.49
CDY33613	Canola	mitochondrion	80.56	80.98
TraesCS6D01G291100.1	Wheat	mitochondrion	80.05	80.67
TraesCS6B01G342000.1	Wheat	mitochondrion	80.05	80.67
Os02t0739600-01	Rice	mitochondrion	80.05	80.26
AT1G59900.1	Thale cress	mitochondrion	79.8	80.21
KRH45768	Soybean	mitochondrion	80.56	79.95
KRH74712	Soybean	mitochondrion	74.68	79.78
KRG99219	Soybean	mitochondrion	69.82	79.36
CDY70124	Canola	cytosol	29.41	79.31
Zm00001d017985_P001	Maize	mitochondrion	79.03	79.23
EES05555	Sorghum	mitochondrion	79.03	79.23
VIT_09s0018g01940.t01	Wine grape	mitochondrion, plastid	79.8	78.39
VIT_01s0026g00990.t01	Wine grape	mitochondrion, plastid	79.8	78.39
Zm00001d052289_P001	Maize	mitochondrion	77.75	77.95
CDY38784	Canola	mitochondrion	78.01	77.81
HORVU6Hr1G076810.1	Barley	plastid	80.05	77.48
CDY11622	Canola	mitochondrion	77.24	77.04
CDY16236	Canola	mitochondrion	75.96	76.74
Bra024643.1-P	Field mustard	mitochondrion	75.7	76.49
AT1G24180.1	Thale cress	mitochondrion	76.21	75.83
Bra016238.1-P	Field mustard	mitochondrion	76.98	75.25
CDY28458	Canola	mitochondrion	75.7	74.94
Bra012418.1-P	Field mustard	mitochondrion	75.7	74.75
CDY40292	Canola	mitochondrion	75.45	74.68
EER88157	Sorghum	mitochondrion	75.19	74.43
TraesCS7A01G238900.1	Wheat	mitochondrion	74.42	74.42
TraesCS7D01G199900.1	Wheat	golgi	74.94	74.37
Zm00001d044748_P002	Maize	mitochondrion	74.17	73.98
Os06t0246500-01	Rice	plastid	74.94	73.62
TraesCS7B01G103800.2	Wheat	mitochondrion	67.01	72.38
Bra017890.1-P	Field mustard	cytosol	15.6	67.78
KRG95283	Soybean	cytosol, mitochondrion, plastid	28.39	67.68
CDY55062	Canola	cytosol	32.23	67.02
CDY55064	Canola	plasma membrane	53.45	63.72
CDY14675	Canola	cytosol	70.59	62.73
HORVU7Hr1G040460.4	Barley	mitochondrion	74.94	58.25
Solyc07g042920.1.1	Tomato	cytosol, mitochondrion, plastid	23.79	32.63
Solyc12g009410.1.1	Tomato	plastid	36.06	32.05
Solyc12g009400.1.1	Tomato	plastid	36.06	32.05
Solyc12g055880.1.1	Tomato	cytosol	9.46	27.41
Solyc06g059850.1.1	Tomato	cytosol	25.06	25.79
Solyc05g056480.2.1	Tomato	plastid	27.62	23.13
Solyc04g063350.2.1	Tomato	mitochondrion	27.11	22.46
Solyc06g059840.2.1	Tomato	mitochondrion	25.83	22.15
Solyc12g055890.1.1	Tomato	mitochondrion	15.35	20.2
Solyc04g025710.1.1	Tomato	cytosol	5.12	18.52
Os02t0739700-01	Rice	plastid	2.05	1.81

Protein Annotations

KEGG:00010+1.2.4.1	KEGG:00020+1.2.4.1	KEGG:00620+1.2.4.1	MapMan:2.2.1.1.1	Gene3D:3.40.50.970	ncoils:Coil
InterPro:DH_E1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004739	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0006086	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0016491	GO:GO:0016624	GO:GO:0043231	GO:GO:0055114	UniProt:K4BWH8	PFAM:PF00676
PANTHER:PTHR11516	PANTHER:PTHR11516:SF38	InterPro:Pyrv_DH_E1_asu_subgrp-y	SUPFAM:SSF52518	EnsemblPlantsGene:Solyc05g006520.2	EnsemblPlants:Solyc05g006520.2.1
InterPro:THDP-binding	TIGRFAMs:TIGR03182	UniParc:UPI00027673D7	:	:	:

Description

Pyruvate dehydrogenase E1 component subunit alpha [Source:UniProtKB/TrEMBL;Acc:K4BWH8]

Coordinates

chr5:-:1134244..1140938

Molecular Weight (calculated)

43205.8 Da

IEP (calculated)

7.568

GRAVY (calculated)

-0.302

Length

391 amino acids

Sequence
(BLAST)

001: MALSTSRAIN HIMKPLSAAV CATRRLSSDS TATITVETSL PFTSHNVDPP SRSVETSPME LMTFFKDMTE MRRMEIAADS LYKAKLIRGF CHLYDGQEAV
101: AVGMEAAITK KDCIITAYRD HCIFLGRGGT LVESFAELMG RRDGCSRGKG GSMHFYKKES GFYGGHGIVG AQVPLGIGLA FAQKYKKEDY VTFAMYGDGA
201: ANQGQLFEAL NMAALWDLPA ILVCENNHYG MGTAEWRAAK SPAYYKRGDY VPGLRVDGMD VFAVKQACAF AKQHALKNGP IILEMDTYRY HGHSMSDPGS
301: TYRTRDEISG VRQERDPVER IRSLILAHNI ATEAELKDIE KENRKVVDEA IAKAKESPMP DPSELFTNVY VKGFGVEAYG ADRKELRATL P

Best Arabidopsis Sequence Match ( AT1G59900.1 )
(BLAST)

001: MALSRLSSRS NIITRPFSAA FSRLISTDTT PITIETSLPF TAHLCDPPSR SVESSSQELL DFFRTMALMR RMEIAADSLY KAKLIRGFCH LYDGQEAVAI
101: GMEAAITKKD AIITAYRDHC IFLGRGGSLH EVFSELMGRQ AGCSKGKGGS MHFYKKESSF YGGHGIVGAQ VPLGCGIAFA QKYNKEEAVT FALYGDGAAN
201: QGQLFEALNI SALWDLPAIL VCENNHYGMG TAEWRAAKSP SYYKRGDYVP GLKVDGMDAF AVKQACKFAK QHALEKGPII LEMDTYRYHG HSMSDPGSTY
301: RTRDEISGVR QERDPIERIK KLVLSHDLAT EKELKDMEKE IRKEVDDAIA KAKDCPMPEP SELFTNVYVK GFGTESFGPD RKEVKASLP

Arabidopsis Description

E1 ALPHAPyruvate dehydrogenase E1 component subunit alpha-1, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:P52901]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.