Factsheet for Solyc04g063350.2.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 8

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400063962	Potato	mitochondrion, plastid	93.22	93.42
Solyc06g059850.1.1	Tomato	cytosol	62.92	78.16
TraesCS4B01G071500.1	Wheat	mitochondrion	61.02	61.8
Solyc06g059840.2.1	Tomato	mitochondrion	59.53	61.62
TraesCS5B01G121400.3	Wheat	mitochondrion	61.02	61.41
TraesCS5D01G126700.1	Wheat	mitochondrion	60.81	61.19
TraesCS5A01G120000.3	Wheat	mitochondrion	60.59	60.98
Solyc12g055880.1.1	Tomato	cytosol	17.37	60.74
Bra016423.1-P	Field mustard	mitochondrion	60.17	60.3
CDX96593	Canola	mitochondrion	60.17	60.3
HORVU5Hr1G034820.3	Barley	mitochondrion	59.75	60.13
GSMUA_Achr3P18980_001	Banana	mitochondrion	58.26	59.78
CDY65109	Canola	mitochondrion	59.75	59.62
Os12t0183100-01	Rice	mitochondrion	61.23	59.47
Zm00001d023694_P001	Maize	mitochondrion	61.44	59.43
CDY65512	Canola	mitochondrion	59.32	59.32
Solyc05g056480.2.1	Tomato	plastid	58.69	59.31
Solyc04g025710.1.1	Tomato	cytosol	13.56	59.26
VIT_18s0001g14980.t01	Wine grape	plastid	59.11	59.24
CDY50237	Canola	mitochondrion	59.11	59.11
Bra017912.1-P	Field mustard	mitochondrion	59.11	59.11
KRH64579	Soybean	endoplasmic reticulum	59.11	58.37
KRH53343	Soybean	mitochondrion	59.96	58.11
KXG23145	Sorghum	mitochondrion	61.23	57.11
Solyc12g055890.1.1	Tomato	mitochondrion	35.59	56.57
AT1G21400.5	Thale cress	plastid	59.96	54.01
AT5G34780.1	Thale cress	cytosol, mitochondrion	30.93	40.0
Solyc05g006520.2.1	Tomato	plastid	22.46	27.11
Solyc04g005080.2.1	Tomato	mitochondrion, unclear	21.61	26.09
Solyc07g042920.1.1	Tomato	cytosol, mitochondrion, plastid	15.04	24.91
Solyc12g009400.1.1	Tomato	plastid	21.61	23.18
Solyc12g009410.1.1	Tomato	plastid	21.4	22.95

Protein Annotations

EnsemblPlants:Solyc04g063350.2.1	EnsemblPlantsGene:Solyc04g063350.2	Gene3D:3.40.50.970	GO:GO:0003674	GO:GO:0003824	GO:GO:0008150
GO:GO:0008152	GO:GO:0016624	GO:GO:0055114	InterPro:DH_E1	InterPro:THDP-binding	PANTHER:PTHR43380
PANTHER:PTHR43380:SF2	PFAM:PF00676	SEG:seg	SUPFAM:SSF52518	UniParc:UPI0002766236	UniProt:K4BT25
MapMan:4.2.7.2.1.1	:	:	:	:	:

Description

No Description!

Coordinates

chr4:+:55462543..55469683

Molecular Weight (calculated)

52823.4 Da

IEP (calculated)

6.037

GRAVY (calculated)

-0.429

Length

472 amino acids

Sequence
(BLAST)

001: MANLISKSTK FNHFLQNTRV CFLRSFTTSA AGAGAGGYIQ PAGSFSGESA AIFRPERYQS GKAGEQLDTI DYEEDENQVM DFPGGKVPIT PQMKFISESS
101: EKRLPCYRVL DDDGYPLPGT IFEEVSKELA IKMYSSMVTL QTMDTIFYEA QRQGRLSFYL TTAGEEAINV ASAAALSLDD FVLPQYREVG VILWRGYPLE
201: QVANQLFGNK FDYGKGRQMP CHYGSNELNY LTVSSPIATQ IPQAVGVAYS LKMEKKEACA VTYFGDGSTS EGDFHAALNF AAVLDAPVVF ICRNNGWAIS
301: TPINQQFRSD GIASRGQAYG VRSIRVDGND ALATYSAIRA ARQMAIKEQR PILVEAMTYR VAHHSTSDDS TKYRPVEEIE HWKTAKSPIS KFRKYIQRNG
401: WWNDENESEL RGDIRKQVLQ AIQAAEKVDK PSLKDLFTDV YDKMPLNLQD QEKFVKDAVK RSPKEYPSDV PI

Best Arabidopsis Sequence Match ( AT1G21400.1 )
(BLAST)

001: MAIWFARSKT LVSSLRHNLN LSTILIKRDY SHRPIFYTTS QLSSTAYLSP FGSLRHESTA VETQADHLVQ QIDEVDAQEL DFPGGKVGYT SEMKFIPESS
101: SRRIPCYRVL DEDGRIIPDS DFIPVSEKLA VRMYEQMATL QVMDHIFYEA QRQGRISFYL TSVGEEAINI ASAAALSPDD VVLPQYREPG VLLWRGFTLE
201: EFANQCFGNK ADYGKGRQMP IHYGSNRLNY FTISSPIATQ LPQAAGVGYS LKMDKKNACT VTFIGDGGTS EGDFHAGLNF AAVMEAPVVF ICRNNGWAIS
301: THISEQFRSD GIVVKGQAYG IRSIRVDGND ALAVYSAVRS AREMAVTEQR PVLIEMMTYR VGHHSTSDDS TKYRAADEIQ YWKMSRNPVN RFRKWVEDNG
401: WWSEEDESKL RSNARKQLLQ AIQAAEKWEK QPLTELFNDV YDVKPKNLEE QELGLKELVK KQPQDYPPGF HV

Arabidopsis Description

Thiamin diphosphate-binding fold (THDP-binding) superfamily protein [Source:TAIR;Acc:AT1G21400]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.