Factsheet for PGSC0003DMT400063962

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

plastid 4
mitochondrion 7

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc04g063350.2.1	Tomato	mitochondrion	93.42	93.22
PGSC0003DMT400033905	Potato	mitochondrion	62.21	64.25
PGSC0003DMT400012840	Potato	cytosol, mitochondrion, plasma membrane	35.88	61.9
Bra016423.1-P	Field mustard	mitochondrion	61.15	61.15
CDX96593	Canola	mitochondrion	61.15	61.15
CDY65512	Canola	mitochondrion	60.72	60.59
TraesCS4B01G071500.1	Wheat	mitochondrion	59.87	60.52
CDY65109	Canola	mitochondrion	60.72	60.47
Bra017912.1-P	Field mustard	mitochondrion	60.51	60.38
CDY50237	Canola	mitochondrion	60.51	60.38
TraesCS5B01G121400.3	Wheat	mitochondrion	59.87	60.13
TraesCS5D01G126700.1	Wheat	mitochondrion	59.66	59.91
TraesCS5A01G120000.3	Wheat	mitochondrion	59.45	59.7
HORVU5Hr1G034820.3	Barley	mitochondrion	59.02	59.28
PGSC0003DMT400060275	Potato	mitochondrion	58.6	59.1
KRH53343	Soybean	mitochondrion	60.93	58.93
VIT_18s0001g14980.t01	Wine grape	plastid	58.81	58.81
KRH64579	Soybean	endoplasmic reticulum	59.45	58.58
GSMUA_Achr3P18980_001	Banana	mitochondrion	57.11	58.48
Zm00001d023694_P001	Maize	mitochondrion	60.51	58.4
Os12t0183100-01	Rice	mitochondrion	60.08	58.23
KXG23145	Sorghum	mitochondrion	60.08	55.93
AT1G21400.5	Thale cress	plastid	61.15	54.96
AT5G34780.1	Thale cress	cytosol, mitochondrion	32.06	41.37
PGSC0003DMT400058223	Potato	mitochondrion	21.44	25.83
PGSC0003DMT400004851	Potato	mitochondrion	21.02	25.52
PGSC0003DMT400007571	Potato	plastid	22.08	23.64
PGSC0003DMT400035288	Potato	plastid	21.87	23.57

Protein Annotations

EnsemblPlants:PGSC0003DMT400063962	EnsemblPlantsGene:PGSC0003DMG400024860	EntrezGene:102580777	Gene3D:3.40.50.970	GO:GO:0003674	GO:GO:0003824
GO:GO:0008150	GO:GO:0008152	GO:GO:0016624	GO:GO:0055114	InterPro:DH_E1	InterPro:THDP-binding
PANTHER:PTHR43380	PANTHER:PTHR43380:SF2	PFAM:PF00676	PGSC:PGSC0003DMG400024860	RefSeq:XP_006356334.1	SEG:seg
SUPFAM:SSF52518	UniParc:UPI000295088C	UniProt:M1CBI2	MapMan:4.2.7.2.1.1	:	:

Description

Branched chain alpha-keto acid dehydrogenase E1-alpha subunit [Source:PGSC_GENE;Acc:PGSC0003DMG400024860]

Coordinates

chr4:+:57648904..57653665

Molecular Weight (calculated)

52799.6 Da

IEP (calculated)

7.180

GRAVY (calculated)

-0.412

Length

471 amino acids

Sequence
(BLAST)

001: MANLISKSTK FNHFLLNTRV RFFSPFTTSS GNGGGGFIKP TGSFSGESAT IFRPERYQSG KAGEQLDTID YEEVENQVMD FPGGKVPITS QMKFISELSE
101: KRLPCYRVLD DDGYPLPGTI FEEVSKELAI KMYSSMVTLQ TMDTIFYEAQ RQGRLSFYLT TAGEEAINIA SAAALSLDDF VLPQYREVGV ILWRGYPLEQ
201: VANQLFGNKF DYGKGRQMPC HHGSNELNYL TVSSPIATQI PQAVGVAYSL KMEKKEACAV TYFGDGSTSE GDFHAALNFA AVLDAPVVFI CRNNGWAIST
301: PINQQFRSDG IASKGQAYGI RSIRVDGNDA LATYSAIRAA RKMAIKEQRP ILVEAMTYRV AHHSTSDDST KYRPVEEIEH WKTAKSPIAK FRKYIQRNGW
401: WSDENESKLR GDIRKQVLEA IQAAEKVEKP SLTNLFTDVY DKMPLNLQDQ EKSVKDAVRR FPKEYPSDVP I

Best Arabidopsis Sequence Match ( AT1G21400.1 )
(BLAST)

001: MAIWFARSKT LVSSLRHNLN LSTILIKRDY SHRPIFYTTS QLSSTAYLSP FGSLRHESTA VETQADHLVQ QIDEVDAQEL DFPGGKVGYT SEMKFIPESS
101: SRRIPCYRVL DEDGRIIPDS DFIPVSEKLA VRMYEQMATL QVMDHIFYEA QRQGRISFYL TSVGEEAINI ASAAALSPDD VVLPQYREPG VLLWRGFTLE
201: EFANQCFGNK ADYGKGRQMP IHYGSNRLNY FTISSPIATQ LPQAAGVGYS LKMDKKNACT VTFIGDGGTS EGDFHAGLNF AAVMEAPVVF ICRNNGWAIS
301: THISEQFRSD GIVVKGQAYG IRSIRVDGND ALAVYSAVRS AREMAVTEQR PVLIEMMTYR VGHHSTSDDS TKYRAADEIQ YWKMSRNPVN RFRKWVEDNG
401: WWSEEDESKL RSNARKQLLQ AIQAAEKWEK QPLTELFNDV YDVKPKNLEE QELGLKELVK KQPQDYPPGF HV

Arabidopsis Description

Thiamin diphosphate-binding fold (THDP-binding) superfamily protein [Source:TAIR;Acc:AT1G21400]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.