Factsheet for PGSC0003DMT400035288

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400011072
PGSC0003DMT400069263

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G01090.1	PGSC0003DMT400011072	AT5G50850.1	21798944
AT1G01090.1	PGSC0003DMT400069263	AT5G50850.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU2Hr1G086290.1	Barley	extracellular, vacuole	21.97	93.2
CDY37427	Canola	cytosol, mitochondrion, plastid	32.27	91.56
CDY37428	Canola	cytosol	28.83	85.71
PGSC0003DMT400007571	Potato	plastid	85.13	84.55
Solyc07g042920.1.1	Tomato	cytosol, mitochondrion, plastid	54.0	82.81
VIT_15s0048g02580.t01	Wine grape	plastid	81.92	82.68
CDY37473	Canola	plastid	79.63	82.27
Bra033286.1-P	Field mustard	plastid	80.09	82.16
CDX90009	Canola	plastid	80.09	82.16
Bra032619.1-P	Field mustard	plastid	79.41	81.65
CDY32445	Canola	plastid	79.41	81.65
KRH68960	Soybean	plastid	77.8	81.34
AT1G01090.1	Thale cress	plastid	79.63	81.31
CDY15202	Canola	plastid	79.18	80.65
KRH47800	Soybean	plastid	79.63	80.56
KRH06359	Soybean	nucleus	79.63	80.56
KRG97240	Soybean	plastid	78.26	80.09
TraesCS2D01G010700.1	Wheat	golgi	73.0	75.95
TraesCS2B01G012500.1	Wheat	plastid	72.77	75.53
TraesCS2A01G010100.1	Wheat	plastid	72.54	75.3
GSMUA_Achr11P...	Banana	plastid	73.46	74.65
Os04t0119400-01	Rice	plastid	72.31	74.35
Zm00001d004473_P001	Maize	plastid	72.77	74.3
EES10385	Sorghum	plastid	73.0	74.01
HORVU2Hr1G001600.1	Barley	plastid	71.4	68.27
PGSC0003DMT400058223	Potato	mitochondrion	31.58	35.29
PGSC0003DMT400004851	Potato	mitochondrion	30.43	34.28
GSMUA_Achr5P18750_001	Banana	plastid	68.19	33.04
PGSC0003DMT400012840	Potato	cytosol, mitochondrion, plasma membrane	13.73	21.98
PGSC0003DMT400063962	Potato	mitochondrion, plastid	23.57	21.87
PGSC0003DMT400033905	Potato	mitochondrion	21.74	20.83
PGSC0003DMT400060275	Potato	mitochondrion	22.2	20.77

Protein Annotations

KEGG:00010+1.2.4.1	KEGG:00020+1.2.4.1	KEGG:00620+1.2.4.1	EntrezGene:102606109	Gene3D:3.40.50.970	MapMan:5.1.2.2.1.1
InterPro:DH_E1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004739	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0006086	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0016491	GO:GO:0016624	GO:GO:0043231	GO:GO:0055114	UniProt:M1B234	PFAM:PF00676
EnsemblPlantsGene:PGSC0003DMG402013561	PGSC:PGSC0003DMG402013561	EnsemblPlants:PGSC0003DMT400035288	PANTHER:PTHR11516	PANTHER:PTHR11516:SF25	InterPro:Pyrv_DH_E1_asu_subgrp-y
SUPFAM:SSF52518	InterPro:THDP-binding	TIGRFAMs:TIGR03182	UniParc:UPI00029635CF	RefSeq:XP_006353739.1	SEG:seg

Description

Pyruvate dehydrogenase E1 alpha subunit [Source:PGSC_GENE;Acc:PGSC0003DMG402013561]

Coordinates

chr7:+:41078504..41081700

Molecular Weight (calculated)

48429.0 Da

IEP (calculated)

7.769

GRAVY (calculated)

-0.335

Length

437 amino acids

Sequence
(BLAST)

001: MAMSFSATKV LQPLPLNSTR SAEKPLLCQS LKGSSSFLGS SSHKLSLKKT FYPHQSQRRS NNAVVAVSDV VKEKKSKSKS SSSNLLITKE EGLVLYEDMV
101: LGRTFEDMCA QMYYRGKMFG FVHLYNGQEA VSTGFIKLLK KEDSVVSTYR DHVHALSKGV PARQVMSELF GKTTGCCRGQ GGSMHMFSKE HNVLGGFAFI
201: GEGIPVATGA AFTSKYRREV LKEADCDHVT LAFFGDGTCN NGQFYECLNM AALWKLPIIF VVENNLWAIG MSHLRSTSDP EIWKKGPAFG MPGVHVDGMD
301: VLKVREVAME AVGRARRGEG PTLVECETYR FRGHSLADPD ELRDPAEKNH YATRDPITAL KKYMFENNLV NEAELKAIDK KIDELVEESV EFAEASPVPA
401: RNQLLENVFA DPRGFGIGPD GRYRCEDPKF TEGTAQV

Best Arabidopsis Sequence Match ( AT1G01090.1 )
(BLAST)

001: MATAFAPTKL TATVPLHGSH ENRLLLPIRL APPSSFLGST RSLSLRRLNH SNATRRSPVV SVQEVVKEKQ STNNTSLLIT KEEGLELYED MILGRSFEDM
101: CAQMYYRGKM FGFVHLYNGQ EAVSTGFIKL LTKSDSVVST YRDHVHALSK GVSARAVMSE LFGKVTGCCR GQGGSMHMFS KEHNMLGGFA FIGEGIPVAT
201: GAAFSSKYRR EVLKQDCDDV TVAFFGDGTC NNGQFFECLN MAALYKLPII FVVENNLWAI GMSHLRATSD PEIWKKGPAF GMPGVHVDGM DVLKVREVAK
301: EAVTRARRGE GPTLVECETY RFRGHSLADP DELRDAAEKA KYAARDPIAA LKKYLIENKL AKEAELKSIE KKIDELVEEA VEFADASPQP GRSQLLENVF
401: ADPKGFGIGP DGRYRCEDPK FTEGTAQV

Arabidopsis Description

PDH-E1 ALPHAPyruvate dehydrogenase E1 component subunit alpha [Source:UniProtKB/TrEMBL;Acc:A0A178W8A7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.