Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU2Hr1G086290.1 | Barley | extracellular, vacuole | 35.37 | 50.49 |
| CDY37473 | Canola | plastid | 99.32 | 34.52 |
| CDY70124 | Canola | cytosol | 33.33 | 33.79 |
| CDY32445 | Canola | plastid | 97.28 | 33.65 |
| CDX90009 | Canola | plastid | 97.28 | 33.57 |
| CDY15202 | Canola | plastid | 95.92 | 32.87 |
| AT1G01090.1 | Thale cress | plastid | 95.24 | 32.71 |
| KRH68960 | Soybean | plastid | 86.39 | 30.38 |
| TraesCS2D01G010700.1 | Wheat | golgi | 86.39 | 30.24 |
| TraesCS2B01G012500.1 | Wheat | plastid | 86.39 | 30.17 |
| TraesCS2A01G010100.1 | Wheat | plastid | 86.39 | 30.17 |
| KRG97240 | Soybean | plastid | 86.39 | 29.74 |
| EES10385 | Sorghum | plastid | 87.07 | 29.7 |
| Zm00001d004473_P001 | Maize | plastid | 86.39 | 29.67 |
| Os04t0119400-01 | Rice | plastid | 85.71 | 29.65 |
| KRH47800 | Soybean | plastid | 87.07 | 29.63 |
| KRH06359 | Soybean | nucleus | 86.39 | 29.4 |
| VIT_15s0048g02580.t01 | Wine grape | plastid | 86.39 | 29.33 |
| PGSC0003DMT400007571 | Potato | plastid | 87.07 | 29.09 |
| Solyc12g009410.1.1 | Tomato | plastid | 87.07 | 29.09 |
| Solyc12g009400.1.1 | Tomato | plastid | 87.07 | 29.09 |
| PGSC0003DMT400035288 | Potato | plastid | 85.71 | 28.83 |
| GSMUA_Achr11P... | Banana | plastid | 83.67 | 28.6 |
| HORVU2Hr1G001600.1 | Barley | plastid | 86.39 | 27.79 |
| CDY55062 | Canola | cytosol | 33.33 | 26.06 |
| CDY31596 | Canola | mitochondrion | 11.56 | 25.37 |
| Solyc07g042920.1.1 | Tomato | cytosol, mitochondrion, plastid | 38.78 | 20.0 |
| CDY16236 | Canola | mitochondrion | 35.37 | 13.44 |
| CDY24500 | Canola | mitochondrion | 35.37 | 13.37 |
| CDY33613 | Canola | mitochondrion | 35.37 | 13.37 |
| CDY11622 | Canola | mitochondrion | 35.37 | 13.27 |
| CDY38784 | Canola | mitochondrion | 35.37 | 13.27 |
| CDY40292 | Canola | mitochondrion | 34.69 | 12.91 |
| CDY28458 | Canola | mitochondrion | 34.69 | 12.91 |
| CDY14675 | Canola | cytosol | 36.05 | 12.05 |
| GSMUA_Achr5P18750_001 | Banana | plastid | 67.35 | 10.98 |
| CDX78354 | Canola | plastid | 22.45 | 6.99 |
| CDX81122 | Canola | plastid | 21.77 | 6.85 |
| CDX96593 | Canola | mitochondrion | 21.09 | 6.58 |
| CDY65512 | Canola | mitochondrion | 20.41 | 6.36 |
| CDY50237 | Canola | mitochondrion | 20.41 | 6.36 |
| CDY65109 | Canola | mitochondrion | 20.41 | 6.34 |
| CDY55064 | Canola | plasma membrane | 4.08 | 1.83 |
| CDY37427 | Canola | cytosol, mitochondrion, plastid | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:CDY37428 | EnsemblPlantsGene:GSBRNA2T00064006001 | Gene3D:3.40.50.970 | GO:A0A078HKN3 | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0016624 | GO:GO:0055114 | InterPro:DH_E1 | InterPro:THDP-binding |
| ncoils:Coil | PANTHER:PTHR11516 | PANTHER:PTHR11516:SF25 | PFAM:PF00676 | ProteinID:CDY37428 | ProteinID:CDY37428.1 |
| SUPFAM:SSF52518 | UniParc:UPI0004EE6A16 | UniProt:A0A078HKN3 | MapMan:35.1 | : | : |
Description
BnaC08g45660DBnaC08g45660D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HKN3]
Coordinates
chrLK032400:+:62778..63317
Molecular Weight (calculated)
16236.2 Da
IEP (calculated)
4.710
GRAVY (calculated)
-0.602
Length
147 amino acids
Sequence
(BLAST)
(BLAST)
001: MPGVHVDGMD VLKVREVAKE AVSRARRGEG PTLVECETYR FRGHSLADPD ELRDAAEKAK YAARDPITAL KKYLIENKLA NEGELKTIEK KIDDLVEEAV
101: EFADASPQPG RSQLLENVFA DPKGFGIGPD GRYMCEDPKF TEGTAQV
101: EFADASPQPG RSQLLENVFA DPKGFGIGPD GRYMCEDPKF TEGTAQV
001: MATAFAPTKL TATVPLHGSH ENRLLLPIRL APPSSFLGST RSLSLRRLNH SNATRRSPVV SVQEVVKEKQ STNNTSLLIT KEEGLELYED MILGRSFEDM
101: CAQMYYRGKM FGFVHLYNGQ EAVSTGFIKL LTKSDSVVST YRDHVHALSK GVSARAVMSE LFGKVTGCCR GQGGSMHMFS KEHNMLGGFA FIGEGIPVAT
201: GAAFSSKYRR EVLKQDCDDV TVAFFGDGTC NNGQFFECLN MAALYKLPII FVVENNLWAI GMSHLRATSD PEIWKKGPAF GMPGVHVDGM DVLKVREVAK
301: EAVTRARRGE GPTLVECETY RFRGHSLADP DELRDAAEKA KYAARDPIAA LKKYLIENKL AKEAELKSIE KKIDELVEEA VEFADASPQP GRSQLLENVF
401: ADPKGFGIGP DGRYRCEDPK FTEGTAQV
101: CAQMYYRGKM FGFVHLYNGQ EAVSTGFIKL LTKSDSVVST YRDHVHALSK GVSARAVMSE LFGKVTGCCR GQGGSMHMFS KEHNMLGGFA FIGEGIPVAT
201: GAAFSSKYRR EVLKQDCDDV TVAFFGDGTC NNGQFFECLN MAALYKLPII FVVENNLWAI GMSHLRATSD PEIWKKGPAF GMPGVHVDGM DVLKVREVAK
301: EAVTRARRGE GPTLVECETY RFRGHSLADP DELRDAAEKA KYAARDPIAA LKKYLIENKL AKEAELKSIE KKIDELVEEA VEFADASPQP GRSQLLENVF
401: ADPKGFGIGP DGRYRCEDPK FTEGTAQV
Arabidopsis Description
PDH-E1 ALPHAPyruvate dehydrogenase E1 component subunit alpha [Source:UniProtKB/TrEMBL;Acc:A0A178W8A7]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.