Factsheet for GSMUA_Achr11P22600_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr5P25000_001
GSMUA_Achr8P09180_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G01090.1	GSMUA_Achr5P25000_001	AT5G50850.1	21798944
AT1G01090.1	GSMUA_Achr8P09180_001	AT5G50850.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU2Hr1G086290.1	Barley	extracellular, vacuole	22.09	92.23
CDY37427	Canola	cytosol, mitochondrion, plastid	30.7	85.71
CDY37428	Canola	cytosol	28.6	83.67
TraesCS2D01G010700.1	Wheat	golgi	78.14	80.0
TraesCS2B01G012500.1	Wheat	plastid	77.91	79.57
TraesCS2A01G010100.1	Wheat	plastid	77.44	79.1
Os04t0119400-01	Rice	plastid	77.91	78.82
Zm00001d004473_P001	Maize	plastid	78.37	78.74
EES10385	Sorghum	plastid	78.37	78.19
VIT_15s0048g02580.t01	Wine grape	plastid	76.05	75.52
KRH68960	Soybean	plastid	73.02	75.12
CDY37473	Canola	plastid	73.02	74.23
Solyc12g009410.1.1	Tomato	plastid	75.58	73.86
AT1G01090.1	Thale cress	plastid	73.49	73.83
KRG97240	Soybean	plastid	73.26	73.77
PGSC0003DMT400035288	Potato	plastid	74.65	73.46
Bra032619.1-P	Field mustard	plastid	72.56	73.41
CDY32445	Canola	plastid	72.56	73.41
PGSC0003DMT400007571	Potato	plastid	75.12	73.41
Solyc12g009400.1.1	Tomato	plastid	75.12	73.41
KRH47800	Soybean	plastid	73.49	73.15
Bra033286.1-P	Field mustard	plastid	72.33	73.0
CDX90009	Canola	plastid	72.33	73.0
KRH06359	Soybean	nucleus	72.79	72.45
CDY15202	Canola	plastid	72.09	72.26
HORVU2Hr1G001600.1	Barley	plastid	76.28	71.77
Solyc07g042920.1.1	Tomato	cytosol, mitochondrion, plastid	45.81	69.12
GSMUA_Achr10P...	Banana	cytosol, mitochondrion	28.14	40.47
GSMUA_Achr1P18330_001	Banana	cytosol, mitochondrion	29.3	38.89
GSMUA_Achr7P05520_001	Banana	cytosol, mitochondrion	25.58	37.8
GSMUA_Achr4P20080_001	Banana	mitochondrion	15.12	37.79
GSMUA_Achr5P18750_001	Banana	plastid	78.6	37.47
GSMUA_Achr4P20070_001	Banana	cytosol	4.19	36.0
GSMUA_Achr3P18980_001	Banana	mitochondrion	22.56	21.09

Protein Annotations

KEGG:00010+1.2.4.1	KEGG:00020+1.2.4.1	KEGG:00620+1.2.4.1	Gene3D:3.40.50.970	MapMan:5.1.2.2.1.1	ncoils:Coil
InterPro:DH_E1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004739	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0006086	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0016491	GO:GO:0016624	GO:GO:0043231	GO:GO:0055114	EnsemblPlantsGene:GSMUA_Achr11G22600_001	EnsemblPlants:GSMUA_Achr11P22600_001
EnsemblPlants:GSMUA_Achr11T22600_001	UniProt:M0RUJ0	PFAM:PF00676	PANTHER:PTHR11516	PANTHER:PTHR11516:SF25	InterPro:Pyrv_DH_E1_asu_subgrp-y
SUPFAM:SSF52518	InterPro:THDP-binding	TIGRFAMs:TIGR03182	UniParc:UPI0002960816	SEG:seg	:

Description

Pyruvate dehydrogenase E1 component subunit alpha [Source:GMGC_GENE;Acc:GSMUA_Achr11G22600_001]

Coordinates

chr11:-:22853185..22855830

Molecular Weight (calculated)

46897.0 Da

IEP (calculated)

6.245

GRAVY (calculated)

-0.208

Length

430 amino acids

Sequence
(BLAST)

001: MSAFSAVRIP FPAVVAARST GEKPSSPFLC SPAAAPGIHS SPLRSPRLGR PPLAVSSDVL SSQKPLGSNS SPSYQAVISR DEALELYEDM VLGRVFEDMC
101: AQMYYRGKMF GFVHLYNGQE AVSTGFIKLL ETRDSVVSTY RDHVHAISKG VPARAVMAEL FGKATGCCRG QGGSMHMFSE PHNLLGGFAF IGEGIPVATG
201: AAFSSKYRHE VLKEARPDGL DVTVAFFGDG TCNNGQFFEC LNMAELWKLP IVFVVENNLW AIGMSHLRAT SDPEIWKKGP AFGMPGVHVD GMDVLKVREV
301: AMEAIARARN GEGPTLVECE TYRFRGHSLA DPDELRKADE KSHYAARDPI VSLKKYILEK NLASESELKA IEKKIDDIIE EAVEFADSSP HPPRSQLLEN
401: VFADPKGFGI GPDGKYRCED PKFTEGTAQV

Best Arabidopsis Sequence Match ( AT1G01090.1 )
(BLAST)

001: MATAFAPTKL TATVPLHGSH ENRLLLPIRL APPSSFLGST RSLSLRRLNH SNATRRSPVV SVQEVVKEKQ STNNTSLLIT KEEGLELYED MILGRSFEDM
101: CAQMYYRGKM FGFVHLYNGQ EAVSTGFIKL LTKSDSVVST YRDHVHALSK GVSARAVMSE LFGKVTGCCR GQGGSMHMFS KEHNMLGGFA FIGEGIPVAT
201: GAAFSSKYRR EVLKQDCDDV TVAFFGDGTC NNGQFFECLN MAALYKLPII FVVENNLWAI GMSHLRATSD PEIWKKGPAF GMPGVHVDGM DVLKVREVAK
301: EAVTRARRGE GPTLVECETY RFRGHSLADP DELRDAAEKA KYAARDPIAA LKKYLIENKL AKEAELKSIE KKIDELVEEA VEFADASPQP GRSQLLENVF
401: ADPKGFGIGP DGRYRCEDPK FTEGTAQV

Arabidopsis Description

PDH-E1 ALPHAPyruvate dehydrogenase E1 component subunit alpha [Source:UniProtKB/TrEMBL;Acc:A0A178W8A7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.